The structural basis for the enzymatic activity and allosteric regulation of Eschericia coli glycerol kinase, which is an essential regulatory enzyme for glycerol metabolism in all organisms examined, will be probed by a combination of X-ray crystallographic studies, site-directed and random mutagenesis, reaction kinetic analysis and synthesis of novel transition- state and bisubstrate compounds. Glycerol kinase, which catalyzed the MgATP dependent phosphorylation of glycerol to form glycerol-3-phosphate, is a rare example of a strictly velocity modulated enzyme, suggesting that the regulatory behavior is a property of the transition state of the reaction. It also displays negative cooperativity with respect to ATP and half-site reactivity with respect to all substrates. However, a unique feature of glycerol kinase is that it is regulated by two different allosteric effectors in an additive manner: a product of glycolysis (fructose 1,6-bisphosphate) and signal transducing protein, IIIglc, depending on the state of phosphorylation of the regulatory protein. As crystals and three-dimensional structures have been obtained of the regulatory protein alone, the enzyme alone, and the complex of the two proteins together, the proposed research is uniquely poised to provide the first detailed picture of a phosphorylation-dependent protein-protein regulatory interaction. Mutants of glycerol kinase individually defective in each of the three aspects of the allosteric response have been prepared, and their structures will be analyzed to ascertain the structural consequences of the mutations. The long term goals are to determine the basis for the phosphoryl transfer reaction, and how it is controlled by the oligomeric states of the proteins and how allosteric effectors regulate the enzymatic activity. The enzyme will also be used as a system for development of potential transition-state analogs, which are not at present available for phosphoryl transfer enzymes. The project is expected to shed light on the general nature of intracellular communication, which is primarily effected by phosphoryl transfer reactions.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM042618-05
Application #
2181528
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1991-04-01
Project End
1999-06-30
Budget Start
1995-07-01
Budget End
1996-06-30
Support Year
5
Fiscal Year
1995
Total Cost
Indirect Cost
Name
University of Oregon
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
948117312
City
Eugene
State
OR
Country
United States
Zip Code
97403
Henderson, J Nathan; Osborn, Maire F; Koon, Nayden et al. (2009) Excited state proton transfer in the red fluorescent protein mKeima. J Am Chem Soc 131:13212-3
Lohman, Jeremy R; Remington, S James (2008) Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments. Biochemistry 47:8678-88
Shi, Xinghua; Abbyad, Paul; Shu, Xiaokun et al. (2007) Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 2. Unusual photophysical properties. Biochemistry 46:12014-25
Shu, Xiaokun; Leiderman, Pavel; Gepshtein, Rinat et al. (2007) An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V. Protein Sci 16:2703-10
Shu, Xiaokun; Kallio, Karen; Shi, Xinghua et al. (2007) Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry 46:12005-13
Remington, S James (2006) Fluorescent proteins: maturation, photochemistry and photophysics. Curr Opin Struct Biol 16:714-21
Cannon, Mark B; Remington, S James (2006) Re-engineering redox-sensitive green fluorescent protein for improved response rate. Protein Sci 15:45-57
McAnaney, Tim B; Shi, Xinghua; Abbyad, Paul et al. (2005) Green fluorescent protein variants as ratiometric dual emission pH sensors. 3. Temperature dependence of proton transfer. Biochemistry 44:8701-11
Hanson, George T; Aggeler, Robert; Oglesbee, Devin et al. (2004) Investigating mitochondrial redox potential with redox-sensitive green fluorescent protein indicators. J Biol Chem 279:13044-53
Hanson, George T; McAnaney, Tim B; Park, Eun Sun et al. (2002) Green fluorescent protein variants as ratiometric dual emission pH sensors. 1. Structural characterization and preliminary application. Biochemistry 41:15477-88

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