Modern quantum chemical methods can be employed for theoretical calculations of the electronic structures of representative Mn-oxo and Fe-oxo complexes relevant to biology. Quantum mechanical density functional methods are used to describe and analyze important properties of the active site. Recently, our group combined the density functional approach with an electrostatic description of the longer range environment. Our purpose is to develop a detailed understanding of chemical bonding, magnetic properties, and energetics of these systems, and to relate these to the underlying electronic structure as a function of oxidation state, ligand environment and geometry. Major goals of this project are: (1) To perform calculations on Mn-oxo dimer and tetramer complexes to characterize different oxidation states and coordination geometries that may be relevant for water oxidation and molecular oxygen evolution as occurs in the oxygen evolving complex (OEC) of photosystem II in plants and cyanobacteria. (2) To perform electronic structure calculation on well defined model Fe-O dimer complexes containing aquo, hydroxo, oxo and carboxylate bridging groups, and terminal nitrogen and/or oxygen ligands. Comparisons will be made of calculated magnetic and spectroscopic properties with current experimental studies of synthetic Fe-O systems, and with calculated and experimental properties of enzyme active sites including ribonucleotide reductase (RR) and hemerythrin (Hr), and methan monooxygenase. Quantum mechanical geometry optimization will be used on active site and synthetic model systems. (3) to further develop and apply the coupled density functional/electrostatic methodology on large spin coupled transition metal complexes containing manganese-oxo and iron-oxo centers.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM043278-07
Application #
6018792
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1991-05-01
Project End
2002-06-30
Budget Start
1999-07-01
Budget End
2000-06-30
Support Year
7
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Luber, Sandra; Leung, Sophie; Herrmann, Carmen et al. (2014) EXAFS simulation refinement based on broken-symmetry DFT geometries for the Mn(IV)-Fe(III) center of class I RNR from Chlamydia trachomatis. Dalton Trans 43:576-83
Fu, Li; Xiao, Dequan; Wang, Zhuguang et al. (2013) Chiral sum frequency generation for in situ probing proton exchange in antiparallel ?-sheets at interfaces. J Am Chem Soc 135:3592-8
Xiao, Dequan; Fu, Li; Liu, Jian et al. (2012) Amphiphilic adsorption of human islet amyloid polypeptide aggregates to lipid/aqueous interfaces. J Mol Biol 421:537-47
Rivalta, Ivan; Brudvig, Gary W; Batista, Victor S (2012) Oxomanganese complexes for natural and artificial photosynthesis. Curr Opin Chem Biol 16:11-8
Han, Wen-Ge; Noodleman, Louis (2011) DFT calculations for intermediate and active states of the diiron center with a tryptophan or tyrosine radical in Escherichia coli ribonucleotide reductase. Inorg Chem 50:2302-20
Han, Wen-Ge; Sandala, Gregory M; Giammona, Debra Ann et al. (2011) Mossbauer properties of the diferric cluster and the differential iron(II)-binding affinity of the iron sites in protein R2 of class Ia Escherichia coli ribonucleotide reductase: a DFT/electrostatics study. Dalton Trans 40:11164-75
Rivalta, Ivan; Amin, Muhamed; Luber, Sandra et al. (2011) Structural-functional role of chloride in photosystem II. Biochemistry 50:6312-5
Luber, Sandra; Rivalta, Ivan; Umena, Yasufumi et al. (2011) S1-state model of the O2-evolving complex of photosystem II. Biochemistry 50:6308-11
Watt, Eric D; Rivalta, Ivan; Whittier, Sean K et al. (2011) Reengineering rate-limiting, millisecond enzyme motions by introduction of an unnatural amino acid. Biophys J 101:411-20
Han, Wen-Ge; Noodleman, Louis (2010) Quantum cluster size and solvent polarity effects on the geometries and Mössbauer properties of the active site model for ribonucleotide reductase intermediate X: a density functional theory study. Theor Chem Acc 125:305-317

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