Studies on the pathway for acetate conversion to methane by the methanoarchaeon Methanosarcina thermophila have identified enzymes commonly found in physiologically and metabolically diverse anaerobic microbes from the Bacteria domain. Three of these enzymes are virtually ubiquitous in anaerobes: acetate kinase, phosphotransacetylase, and carbonic anhydrases of the (and (classes. Acetate kinase and phosphotransacetylase play key roles in energy-yielding pathways, and the widespread occurrence of carbonic anhydrases suggests equally important functions for this enzyme. The sequences of these enzymes from M. thermophila have high identity to the enzymes from the Bacteria domain indicating common ancestors and mechanisms of catalysis. Despite their broad occurrence and importance in anaerobic procaryotes, very few mechanistic studies had been reported until the enzymes from M. thermophila were recently overproduced in Escherichia coli (the first for any of these enzymes) opening the way for modern methods of investigation. This application proposes to continue the investigation of these enzymes to understand the biochemical properties, focusing on the mechanisms of catalysis. The results are expected to contribute not only to a deeper understanding of the acetate fermentation pathway, but more importantly to the broader field of anaerobic microbiology and beyond.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM044661-10
Application #
6386013
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Program Officer
Jones, Warren
Project Start
1992-02-01
Project End
2004-06-30
Budget Start
2001-07-01
Budget End
2002-06-30
Support Year
10
Fiscal Year
2001
Total Cost
$181,066
Indirect Cost
Name
Pennsylvania State University
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
City
University Park
State
PA
Country
United States
Zip Code
16802
Zimmerman, Sabrina; Domsic, John F; Tu, Chingkuang et al. (2013) Role of Trp19 and Tyr200 in catalysis by the ?-class carbonic anhydrase from Methanosarcina thermophila. Arch Biochem Biophys 529:11-7
Ferry, James G (2011) Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass. Curr Opin Biotechnol 22:351-7
Ferry, James G (2010) The gamma class of carbonic anhydrases. Biochim Biophys Acta 1804:374-81
Li, Lingyun; Li, Qingbo; Rohlin, Lars et al. (2007) Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. J Proteome Res 6:759-71
Gorrell, Andrea; Ferry, James G (2007) Investigation of the Methanosarcina thermophila acetate kinase mechanism by fluorescence quenching. Biochemistry 46:14170-6
Lawrence, Sarah H; Ferry, James G (2006) Steady-state kinetic analysis of phosphotransacetylase from Methanosarcina thermophila. J Bacteriol 188:1155-8
Lawrence, Sarah H; Luther, Kelvin B; Schindelin, Hermann et al. (2006) Structural and functional studies suggest a catalytic mechanism for the phosphotransacetylase from Methanosarcina thermophila. J Bacteriol 188:1143-54
Gorrell, Andrea; Lawrence, Sarah H; Ferry, James G (2005) Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila. J Biol Chem 280:10731-42
Ingram-Smith, Cheryl; Gorrell, Andrea; Lawrence, Sarah H et al. (2005) Characterization of the acetate binding pocket in the Methanosarcina thermophila acetate kinase. J Bacteriol 187:2386-94
Tripp, Brian C; Bell 3rd, Caleb B; Cruz, Francisco et al. (2004) A role for iron in an ancient carbonic anhydrase. J Biol Chem 279:6683-7

Showing the most recent 10 out of 35 publications