The heterogeneous nuclear fibonucleoprotein K (hnRNP K) protein is involved in multiple processes that compose gene expression including transcription and RNA processing. K protein is inducibly phosphorylated by several kinase cascades. K protein is comprised of multiple domains that serve to engage DNA, RNA and protein factors involved in gene expression and signal transduction. K protein interactions are regulated by phosphorylation. We have shown that treatment of cells with serum, a model for mitogenic stimulation, causes recruitment of K protein to inducibly transcribed loci, including c-myc, egr-1 and other immediate-early genes. Based on these observations we propose a hypothesis that K protein serves to link kinase cascades to inducibly transcribed c-myc and egr-1 gene loci by facilitating phosphorylation of factors involved in transcription and pre-mRNA processing. The current proposal represents a continuation of our research on K protein. We will identify serum inducible kinase cascades that direct K protein to distinct domains within the c-myc and egr-1 loci that include not only DNA elements but also pre-mRNA and protein complexes. Chromatin immunoprecipitation (CHIP) assays, computer-based analysis and in vitro binding will be used to determine if K protein binds to the promoter, transcribed and other regions within c-myc and egr-1 loci. Specific kinase inhibitors, constitutively active and dominant negative kinase mutants will be used to define upstream signals responsible for K protein recruitment to these sites. We will explore the mechanisms responsible for the recruitment of K protein to the inducible c-myc and egr-1 loci. Mutation and deletion analysis will be used to map K protein modules that are responsible for its recruitment to DNA, RANA, and protein sites within a target gene locus. Pharmacologic and genetic strategies will be used to define which cascades regulate these K protein domains that mediate its recruitment. We will define the role of K protein recruitment in the inducible expression of the c-myc and egr-I loci. Northern blot analysis, RT-PCR, transcription and pre-mRNA splicing assays will be used to assess the effects of K protein on the expression of target gene loci. Kinase assays, pharmacologic and genetic strategies will be used to test the role of K protein in regulating both phosphorylation and activity of components of transcription and splicing machinery. Each stage of gene expression provides a potential point for regulation by signal transduction pathways triggered by mitogens. K protein represents a conceptually novel class of nucleic acid-binding factors that may provide an avenue for kinase cascades to regulate distinct processes that compose gene expression. Exploring the mechanisms and rote of K protein mitogen-induced recruitment to inducible gene loci will provide new insight into the regulation of gene expression.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM045134-13
Application #
6732573
Study Section
Physiological Chemistry Study Section (PC)
Program Officer
Anderson, James J
Project Start
1991-08-01
Project End
2008-03-31
Budget Start
2004-04-01
Budget End
2005-03-31
Support Year
13
Fiscal Year
2004
Total Cost
$319,999
Indirect Cost
Name
University of Washington
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
605799469
City
Seattle
State
WA
Country
United States
Zip Code
98195
Mikula, Michal; Bomsztyk, Karol (2011) Direct recruitment of ERK cascade components to inducible genes is regulated by heterogeneous nuclear ribonucleoprotein (hnRNP) K. J Biol Chem 286:9763-75
Nelson, Joel; Denisenko, Oleg; Bomsztyk, Karol (2011) Profiling RNA polymerase II using the fast chromatin immunoprecipitation method. Methods Mol Biol 703:219-34
Aker, Mari; Bomsztyk, Karol; Emery, David W (2010) Poly(ADP-ribose) polymerase-1 (PARP-1) contributes to the barrier function of a vertebrate chromatin insulator. J Biol Chem 285:37589-97
Nelson, Joel; Denisenko, Oleg; Bomsztyk, Karol (2009) The fast chromatin immunoprecipitation method. Methods Mol Biol 567:45-57
Naito, Masayo; Bomsztyk, Karol; Zager, Richard A (2009) Renal ischemia-induced cholesterol loading: transcription factor recruitment and chromatin remodeling along the HMG CoA reductase gene. Am J Pathol 174:54-62
Naito, Masayo; Zager, Richard A; Bomsztyk, Karol (2009) BRG1 increases transcription of proinflammatory genes in renal ischemia. J Am Soc Nephrol 20:1787-96
Zager, Richard A; Johnson, Ali C M; Naito, Masayo et al. (2008) Growth and development alter susceptibility to acute renal injury. Kidney Int 74:674-8
Naito, Masayo; Bomsztyk, Karol; Zager, Richard A (2008) Endotoxin mediates recruitment of RNA polymerase II to target genes in acute renal failure. J Am Soc Nephrol 19:1321-30
Flanagin, Steve; Nelson, Joel D; Castner, David G et al. (2008) Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events. Nucleic Acids Res 36:e17
Zager, Richard A; Johnson, Ali C M; Naito, Masayo et al. (2008) Maleate nephrotoxicity: mechanisms of injury and correlates with ischemic/hypoxic tubular cell death. Am J Physiol Renal Physiol 294:F187-97

Showing the most recent 10 out of 20 publications