The goal of this research is to determine the mechanism and regulation of the initiation of DNA replication in eukaryotic cells. It is clear that for maintenance of the integrity of the genome from one cell generation to the next, DNA must be duplicated in a highly controlled and accurate manner. Interruption of these controls may translate to more rapid progression of neoplastic transformation. Moreover, the DNA replication proteins represent tangible targets for therapeutic intervention of proliferation of pathogenic eukaryotes. In recent studies the DNA sequences and initiator protein that cooperate to determine the location of origins of DNA replication in Saccharomyces cerevisiae have been identified. The initiator protein is a multi-subunit, sequence-specific DNA binding protein. It is hypothesized to interact with other proteins that are required for the initiation of DNA replication. Proposed research in this application will investigate how DNA replication occurs in an ORC dependent manner and will study how initiation of DNA replication is temporally controlled during progression through the cell division cycle. In specific alm 1, proteins that interact with the DNA sequences that constitute the origin of DNA replication will be identified.
In specific aim 2, proteins that interact with ORC will be identified by biochemical and genetic methods. From studies on virus DNA replication, the DNA polymerase alpha-primase complex has been demonstrated to function in the initiation of DNA replication.
In specific aim 3, proteins that interact with this essential polymerase will be identified.
Specific aim 4 has a goal of establishing a soluble cell-free system for replication of chromosomal DNA. Finally, specific aim 5 deals with the role of the identified initiation proteins as targets of the known regulatory proteins that control progression through the cell division cycle.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM045436-07
Application #
2713725
Study Section
Molecular Cytology Study Section (CTY)
Project Start
1991-07-01
Project End
2000-05-31
Budget Start
1998-06-01
Budget End
1999-05-31
Support Year
7
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Cold Spring Harbor Laboratory
Department
Type
DUNS #
065968786
City
Cold Spring Harbor
State
NY
Country
United States
Zip Code
11724
On, Kin Fan; Jaremko, Matt; Stillman, Bruce et al. (2018) A structural view of the initiators for chromosome replication. Curr Opin Struct Biol 53:131-139
Yuan, Zuanning; Riera, Alberto; Bai, Lin et al. (2017) Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1. Nat Struct Mol Biol 24:316-324
Tocilj, Ante; On, Kin Fan; Yuan, Zuanning et al. (2017) Structure of the active form of human origin recognition complex and its ATPase motor module. Elife 6:
Noguchi, Yasunori; Yuan, Zuanning; Bai, Lin et al. (2017) Cryo-EM structure of Mcm2-7 double hexamer on DNA suggests a lagging-strand DNA extrusion model. Proc Natl Acad Sci U S A 114:E9529-E9538
Sheu, Yi-Jun; Kinney, Justin B; Stillman, Bruce (2016) Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression. Genome Res 26:315-30
Stillman, Bruce (2015) Reconsidering DNA Polymerases at the Replication Fork in Eukaryotes. Mol Cell 59:139-41
Sun, Jingchuan; Fernandez-Cid, Alejandra; Riera, Alberto et al. (2014) Structural and mechanistic insights into Mcm2-7 double-hexamer assembly and function. Genes Dev 28:2291-303
Sheu, Yi-Jun; Kinney, Justin B; Lengronne, Armelle et al. (2014) Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression. Proc Natl Acad Sci U S A 111:E1899-908
Sun, Jingchuan; Evrin, Cecile; Samel, Stefan A et al. (2013) Cryo-EM structure of a helicase loading intermediate containing ORC-Cdc6-Cdt1-MCM2-7 bound to DNA. Nat Struct Mol Biol 20:944-51
Rossmann, Marlies P; Stillman, Bruce (2013) Immunoblotting histones from yeast whole-cell protein extracts. Cold Spring Harb Protoc 2013:625-30

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