The goals of this grant are to understand the assembly, dynamics, and functions of stress granules in the control of gene expression and how aberrant stress granule formation contributes to neurodegenerative diseases. Stress granules are cytoplasmic granules of mRNAs and proteins that form when translation initiation is limiting and assemble in part by interactions between prion-like domains on RNA binding proteins. Stress granules are of importance for two reasons. First, they sequester mRNAs and mRNA binding proteins and play important roles in modulating gene expression and cellular signaling during stress responses. Second, aberrant stress granule accumulation appears to be a causative event in diseases such as Amyotrophic Lateral Sclerosis (ALS), or Frontotemporal lobar degeneration (FTLD). These diseases can be caused by mutations in RNA binding proteins, such as hnRNPA1, which increase stress granule assembly and promote toxic amyloid formation, or by mutations in the AAA-ATPase VCP, which decrease stress granule clearance by autophagy. Given this importance in both normal stress responses and in pathological conditions, an understanding of both normal and pathological stress granule dynamics is critical. We will take advantage of the powerful approaches in yeast cells to understand fundamental aspects of stress granule dynamics and function. We will also apply our knowledge from yeast to understand how pathogenic mutations affect stress granules in mammalian cells. The specific questions addressed in this proposal are: I) What are the composition, dynamics and affects of stress granules in both normal and pathogenic conditions? II) What are molecular mechanisms connecting stress granule assembly with toxic amyloid formation? III) What are the mechanisms by which stress granules are targeted for autophagy? Completion of these aims will reveal fundamental principles of stress granule dynamics and how aberrant stress granules form and contribute to degenerative diseases, which could facilitate the development of new therapies.
This project focuses on understanding the dynamics and functions of stress granules in the control of gene expression and how aberrant stress granule formation contributes to neurodegenerative diseases. The work will reveal how stress granules assemble and disassemble and how aberrant RNP granules that accumulate in neurogenerative disease are formed. A mechanistic understanding of stress granule control may suggest possible therapies for some neurodegenerative diseases.
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|Braselmann, Esther; Wierzba, Aleksandra J; Polaski, Jacob T et al. (2018) A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. Nat Chem Biol 14:964-971|
|Khong, Anthony; Jain, Saumya; Matheny, Tyler et al. (2018) Isolation of mammalian stress granule cores for RNA-Seq analysis. Methods 137:49-54|
|Van Treeck, Briana; Protter, David S W; Matheny, Tyler et al. (2018) RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome. Proc Natl Acad Sci U S A 115:2734-2739|
|Vogler, Thomas O; Wheeler, Joshua R; Nguyen, Eric D et al. (2018) TDP-43 and RNA form amyloid-like myo-granules in regenerating muscle. Nature 563:508-513|
|Van Treeck, Briana; Parker, Roy (2018) Emerging Roles for Intermolecular RNA-RNA Interactions in RNP Assemblies. Cell 174:791-802|
|Protter, David S W; Rao, Bhalchandra S; Van Treeck, Briana et al. (2018) Intrinsically Disordered Regions Can Contribute Promiscuous Interactions to RNP Granule Assembly. Cell Rep 22:1401-1412|
|Khong, Anthony; Matheny, Tyler; Jain, Saumya et al. (2017) The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules. Mol Cell 68:808-820.e5|
|Shukla, Siddharth; Parker, Roy (2017) PARN Modulates Y RNA Stability and Its 3'-End Formation. Mol Cell Biol 37:|
|Wheeler, Joshua R; Jain, Saumya; Khong, Anthony et al. (2017) Isolation of yeast and mammalian stress granule cores. Methods 126:12-17|
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