The long-term goal of this research is to understand the molecular basis of ion conduction and selectivity in K+ channels and cyclic nucleotide-gated channels. K+ channel studies focus on the voltage-gated Shaker K+ channel derived from Drosophila melanogaster and the inward rectifier K+ channel ROMK1 derived from mammalian kidney. The cyclic nucleotide gated channel is from fish olfactory neurons. These channels will be expressed in Xenopus oocytes and studied using two-electrode voltage clamp and patch-recording techniques. Mutations of the pore-forming amino acids will be produced using molecular biological methods and the functional consequences studied. The experiments aim to understand the physical-chemical mechanisms by which selective ion channels recognize and bind the appropriate ions in their pores. The K+ channels and cyclic nucleotide-gated cation channels provide a valuable contrast because although they are members of a common gene superfamily, they have distinct ion selectivity properties. The channels under study are homologs of channels present in humans. The K+ channels underlie a variety of cellular processes including electrical impulse propagation and control of the cell membrane resting potential - both are important to the physiology of cardiovascular and neurological systems. The cyclic nucleotide-gated channels mediate visual and olfactory sensory transduction. This research may open the way, in the future, to the development of pharmacological agents directed against these important proteins.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM047400-08
Application #
6018889
Study Section
Physiology Study Section (PHY)
Project Start
1992-08-01
Project End
2000-07-31
Budget Start
1999-08-01
Budget End
2000-07-31
Support Year
8
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Rockefeller University
Department
Biology
Type
Other Domestic Higher Education
DUNS #
071037113
City
New York
State
NY
Country
United States
Zip Code
10065
Valiyaveetil, Francis I; Sekedat, Matthew; Mackinnon, Roderick et al. (2004) Glycine as a D-amino acid surrogate in the K(+)-selectivity filter. Proc Natl Acad Sci U S A 101:17045-9
Zhou, Yufeng; MacKinnon, Roderick (2004) Ion binding affinity in the cavity of the KcsA potassium channel. Biochemistry 43:4978-82
Zhou, Ming; MacKinnon, Roderick (2004) A mutant KcsA K(+) channel with altered conduction properties and selectivity filter ion distribution. J Mol Biol 338:839-46
Zhou, Yufeng; MacKinnon, Roderick (2003) The occupancy of ions in the K+ selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates. J Mol Biol 333:965-75
Yifrach, Ofer; MacKinnon, Roderick (2002) Energetics of pore opening in a voltage-gated K(+) channel. Cell 111:231-9
Jiang, Y; MacKinnon, R (2000) The barium site in a potassium channel by x-ray crystallography. J Gen Physiol 115:269-72
Gulbis, J M; Zhou, M; Mann, S et al. (2000) Structure of the cytoplasmic beta subunit-T1 assembly of voltage-dependent K+ channels. Science 289:123-7
Morrill, J A; MacKinnon, R (1999) Isolation of a single carboxyl-carboxylate proton binding site in the pore of a cyclic nucleotide-gated channel. J Gen Physiol 114:71-83
Gulbis, J M; Mann, S; MacKinnon, R (1999) Structure of a voltage-dependent K+ channel beta subunit. Cell 97:943-52
Roux, B; MacKinnon, R (1999) The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations. Science 285:100-2

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