Hills Jr, Ronald D; Kathuria, Sagar V; Wallace, Louise A et al. (2010) Topological frustration in beta alpha-repeat proteins: sequence diversity modulates the conserved folding mechanisms of alpha/beta/alpha sandwich proteins. J Mol Biol 398:332-50
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Arora, Karunesh; Brooks Iii 3rd, Charles L (2009) Functionally important conformations of the Met20 loop in dihydrofolate reductase are populated by rapid thermal fluctuations. J Am Chem Soc 131:5642-7
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Hills Jr, Ronald D; Brooks 3rd, Charles L (2008) Subdomain competition, cooperativity, and topological frustration in the folding of CheY. J Mol Biol 382:485-95
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Chen, Jianhan; Brooks 3rd, Charles L; Khandogin, Jana (2008) Recent advances in implicit solvent-based methods for biomolecular simulations. Curr Opin Struct Biol 18:140-8
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Hills Jr, Ronald D; Brooks 3rd, Charles L (2008) Coevolution of function and the folding landscape: correlation with density of native contacts. Biophys J 95:L57-9
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Shahrezaei, Vahid; Swain, Peter S (2008) The stochastic nature of biochemical networks. Curr Opin Biotechnol 19:369-74
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Chen, Jianhan; Brooks 3rd, Charles L (2007) Critical importance of length-scale dependence in implicit modeling of hydrophobic interactions. J Am Chem Soc 129:2444-5
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Khandogin, Jana; Raleigh, Daniel P; Brooks 3rd, Charles L (2007) Folding intermediate in the villin headpiece domain arises from disruption of a N-terminal hydrogen-bonded network. J Am Chem Soc 129:3056-7
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Hills Jr, Ronald D; Brooks 3rd, Charles L (2007) Hydrophobic cooperativity as a mechanism for amyloid nucleation. J Mol Biol 368:894-901
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Khandogin, Jana; Brooks 3rd, Charles L (2007) Linking folding with aggregation in Alzheimer's beta-amyloid peptides. Proc Natl Acad Sci U S A 104:16880-5
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