Inosine monophosphate dehydrogenase (IMPDH) enzyme catalyzes the rate-limiting step in guanine nucleotide biosynthesis: the conversion of inosine monophosphate (IMP) to xanthosine monophosphate (XMP) with concomitant reduction of NAD. IMPDH controls the size of the guanine nucleotide pool, which in turn controls proliferation and many other important cellular processes. IMPDH inhibitors are antiproliferative, making the enzyme a drug target for virtually every disease; specific IMPDH inhibitors could be used as immunosuppressive, cancer, antiviral or antimicrobial chemotherapy. We have shown that IMPDH undergoes a large conformational change in mid-catalytic cycle that converts the enzyme from a dehydrogenase to a hydrolase, and thus presents a unique opportunity to investigate the role of conformational dynamics in catalysis. This conformational change also appears to be a major determinant of drug selectivity. This proposal outlines an investigation of the mechanism and function of IMPDH. We will delineate the structural features that account for the varied activities of IMPDH isozymes. In addition to being crucial for the design of isozyme-specific inhibitors of IMPDH, this work will be an important contribution to understanding the relationship between structure and function in enzyme catalysis.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM054403-06
Application #
6803161
Study Section
Biochemistry Study Section (BIO)
Program Officer
Preusch, Peter C
Project Start
1998-08-01
Project End
2007-08-31
Budget Start
2004-09-01
Budget End
2005-08-31
Support Year
6
Fiscal Year
2004
Total Cost
$258,633
Indirect Cost
Name
Brandeis University
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
616845814
City
Waltham
State
MA
Country
United States
Zip Code
02454
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Cao, Liaoran; Lv, Chao; Yang, Wei (2013) Hidden Conformation Events in DNA Base Extrusions: A Generalized Ensemble Path Optimization and Equilibrium Simulation Study. J Chem Theory Comput 9:
Long, Marcus J C; Hedstrom, Lizbeth (2012) Mushroom tyrosinase oxidizes tyrosine-rich sequences to allow selective protein functionalization. Chembiochem 13:1818-25
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Hedstrom, Lizbeth (2012) The dynamic determinants of reaction specificity in the IMPDH/GMPR family of (*/*)(8) barrel enzymes. Crit Rev Biochem Mol Biol 47:250-63
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Patton, Gregory C; Stenmark, Pål; Gollapalli, Deviprasad R et al. (2011) Cofactor mobility determines reaction outcome in the IMPDH and GMPR (?-?)8 barrel enzymes. Nat Chem Biol 7:950-8
Hedstrom, L; Liechti, G; Goldberg, J B et al. (2011) The antibiotic potential of prokaryotic IMP dehydrogenase inhibitors. Curr Med Chem 18:1909-18

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