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Egli, Martin; Pallan, Pradeep S (2016) Generating Crystallographic Models of DNA Dodecamers from Structures of RNase H:DNA Complexes. Methods Mol Biol 1320:111-26
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Mutisya, Daniel; Selvam, Chelliah; Lunstad, Benjamin D et al. (2014) Amides are excellent mimics of phosphate internucleoside linkages and are well tolerated in short interfering RNAs. Nucleic Acids Res 42:6542-51
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Kowal, Ewa A; Lad, Rahul R; Pallan, Pradeep S et al. (2013) Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction. Nucleic Acids Res 41:7566-76
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Ketkar, Amit; Zafar, Maroof K; Maddukuri, Leena et al. (2013) Leukotriene biosynthesis inhibitor MK886 impedes DNA polymerase activity. Chem Res Toxicol 26:221-32
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Seth, Punit P; Pallan, Pradeep S; Swayze, Eric E et al. (2013) Synthesis, duplex stabilization and structural properties of a fluorinated carbocyclic LNA analogue. Chembiochem 14:58-62
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Seth, Punit P; Yu, Jinghua; Jazayeri, Ali et al. (2012) Synthesis and antisense properties of fluoro cyclohexenyl nucleic acid (F-CeNA), a nuclease stable mimic of 2'-fluoro RNA. J Org Chem 77:5074-85
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Pallan, Pradeep S; Yu, Jinghua; Allerson, Charles R et al. (2012) Insights from crystal structures into the opposite effects on RNA affinity caused by the S- and R-6'-methyl backbone modifications of 3'-fluoro hexitol nucleic acid. Biochemistry 51:7-9
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Ketkar, Amit; Zafar, Maroof K; Banerjee, Surajit et al. (2012) Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues. Biochemistry 51:9234-44
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Patra, Amritraj; Paolillo, Michael; Charisse, Klaus et al. (2012) 2'-Fluoro RNA shows increased Watson-Crick H-bonding strength and stacking relative to RNA: evidence from NMR and thermodynamic data. Angew Chem Int Ed Engl 51:11863-6
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Pallan, Pradeep S; Allerson, Charles R; Berdeja, Andres et al. (2012) Structure and nuclease resistance of 2',4'-constrained 2'-O-methoxyethyl (cMOE) and 2'-O-ethyl (cEt) modified DNAs. Chem Commun (Camb) 48:8195-7
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