The long-term objectives of the proposed project are to elucidate the mechanism of action and in vivo function of Mot1, an essential yeast transcriptional regulator that can activate or repress transcription. Mot1 is a member of a large family of evolutionarily conserved nuclear ATPases (the Snf2/Swi2 family) involved in transcription, DNA repair, and recombination. Defects in human Snf2/Swi2-related protein complexes are known to contribute to certain pediatric cancers, Cockayne's Syndrome, a-thalassemia, and the most common form of X-linked mental retardation. Despite the ubiquitous occurrence of Snf2/Swi2 family members, the molecular mechanisms of action of these proteins are not understood in detail, nor is it understood what roles many of these proteins play in vivo. Mot1 's ATPase activity is required to activate or repress transcription of specific genes in vivo. Consistent with its role as a repressor, Mot1 can dissociate TATA-binding protein (TBP)-DNA complexes in an ATP-dependent reaction. Motl's mechanism of ATP-dependent transcriptional activation is unknown. Biochemical, molecular biological, and genetic approaches will be used to define how Mot1 regulates transcription in vivo and how the Mot1 response of particular promoters is determined. These approaches will also be used to understand how ATP hydrolysis by Mot1 drives TBP/DNA disruption. The proposed analysis of Mot1 function will lead to a better understanding of the role of Motl in transcriptional control as well as a better understanding of the functions of Snf2/Swi2 family members in general.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM055763-07
Application #
6625613
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Tompkins, Laurie
Project Start
1997-05-01
Project End
2006-04-30
Budget Start
2003-05-01
Budget End
2004-04-30
Support Year
7
Fiscal Year
2003
Total Cost
$287,026
Indirect Cost
Name
University of Virginia
Department
Biochemistry
Type
Schools of Medicine
DUNS #
065391526
City
Charlottesville
State
VA
Country
United States
Zip Code
22904
Hoffman, Elizabeth A; Zaidi, Hussain; Shetty, Savera J et al. (2018) An Improved Method for Measuring Chromatin-binding Dynamics Using Time-dependent Formaldehyde Crosslinking. Bio Protoc 8:
Zaidi, Hussain; Hoffman, Elizabeth A; Shetty, Savera J et al. (2017) Second-generation method for analysis of chromatin binding with formaldehyde-cross-linking kinetics. J Biol Chem 292:19338-19355
Zaidi, Hussain A; Auble, David T; Bekiranov, Stefan (2017) RNA synthesis is associated with multiple TBP-chromatin binding events. Sci Rep 7:39631
Viswanathan, Ramya; True, Jason D; Auble, David T (2016) Molecular Mechanism of Mot1, a TATA-binding Protein (TBP)-DNA Dissociating Enzyme. J Biol Chem 291:15714-26
Martínez-Redondo, Vicente; Jannig, Paulo R; Correia, Jorge C et al. (2016) Peroxisome Proliferator-activated Receptor ? Coactivator-1 ? Isoforms Selectively Regulate Multiple Splicing Events on Target Genes. J Biol Chem 291:15169-84
True, Jason D; Muldoon, Joseph J; Carver, Melissa N et al. (2016) The Modifier of Transcription 1 (Mot1) ATPase and Spt16 Histone Chaperone Co-regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization. J Biol Chem 291:15307-19
Butryn, Agata; Schuller, Jan M; Stoehr, Gabriele et al. (2015) Structural basis for recognition and remodeling of the TBP:DNA:NC2 complex by Mot1. Elife 4:
Hoffman, Elizabeth A; Frey, Brian L; Smith, Lloyd M et al. (2015) Formaldehyde crosslinking: a tool for the study of chromatin complexes. J Biol Chem 290:26404-11
Viswanathan, Ramya; Hoffman, Elizabeth A; Shetty, Savera J et al. (2014) Analysis of chromatin binding dynamics using the crosslinking kinetics (CLK) method. Methods 70:97-107
Poorey, Kunal; Viswanathan, Ramya; Carver, Melissa N et al. (2013) Measuring chromatin interaction dynamics on the second time scale at single-copy genes. Science 342:369-72

Showing the most recent 10 out of 36 publications