The long-term goal of this proposal is to understand how circadian clocks function within eukaryotic cells. The purpose of a circadian clock is to regulate cellular processes such that they occur at specific times of the day and night. Circadian clocks are found in all kingdoms of life and the presence of a functional circadian clock has been shown to confer enhanced fitness onto the organism. Forward genetic approaches to understanding clock function have been instrumental in numerous model organisms including Arabidopsis and our initial gene discovery program yielded a key clock gene, TOC1, and the founding member of a novel photoreceptor family, ZTL. The success of this gene discovery program validates the approach, although currently circadian screens in Arabidopsis are not saturated since we are still identifying novel clock genes. We will continue the characterization of existing mutants and isolate novel mutants by developing new reporters based on TOC1, a critical component identified from our previous screens. In addition, we will exploit reverse genetic approaches to explore hypotheses about the role of clock gene family members in the circadian clock. Given the ubiquity of circadian-regulated physiology, the identification of common clock components will have an impact on understanding the pacemaker mechanism and malfunctions associated with known features of human well-being. ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM056006-09
Application #
6824219
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Tompkins, Laurie
Project Start
1996-09-01
Project End
2008-08-31
Budget Start
2004-09-01
Budget End
2005-08-31
Support Year
9
Fiscal Year
2004
Total Cost
$412,940
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Kang, S Earl; Breton, Ghislain; Pruneda-Paz, Jose L (2018) Construction of Arabidopsis Transcription Factor ORFeome Collections and Identification of Protein-DNA Interactions by High-Throughput Yeast One-Hybrid Screens. Methods Mol Biol 1794:151-182
Li, Zheng; Bonaldi, Katia; Uribe, Francisco et al. (2018) A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis. Curr Biol 28:630-639.e4
Lee, Chin-Mei; Feke, Ann; Li, Man-Wah et al. (2018) Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol 177:1170-1186
Kubota, Akane; Ito, Shogo; Shim, Jae Sung et al. (2017) TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet 13:e1006856
Tripathi, Prateek; Carvallo, Marcela; Hamilton, Elizabeth E et al. (2017) Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Proc Natl Acad Sci U S A 114:172-177
Tripathi, Prateek; Pruneda-Paz, José L; Kay, Steve A (2017) A Modified Yeast-one Hybrid System for Heteromeric Protein Complex-DNA Interaction Studies. J Vis Exp :
Shani, Eilon; Salehin, Mohammad; Zhang, Yuqin et al. (2017) Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Curr Biol 27:437-444
Breton, Ghislain; Kay, Steve A; Pruneda-Paz, José L (2016) Identification of Arabidopsis Transcriptional Regulators by Yeast One-Hybrid Screens Using a Transcription Factor ORFeome. Methods Mol Biol 1398:107-18
Huang, He; Alvarez, Sophie; Bindbeutel, Rebecca et al. (2016) Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Mol Cell Proteomics 15:201-17
Waadt, Rainer; Manalansan, Bianca; Rauniyar, Navin et al. (2015) Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses. Plant Physiol 169:760-79

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