The genetic information stored in DNA is protected from attack of many chemicals by the double-stranded nature of this molecule. This protection reduces mutations and assures greater stability for the genetic material. However, copying of the genetic material requires temporary separation of the DNA strands exposing them to chemical hazards. The investigator recently used genetic method to show that the process of transcription creates C to T mutations in the non-transcribed strand of an Escherichia coli gene. The data suggested that this occurs because the rate of hydrolytic deamination of cytosines in the non-transcribed strand is higher. He proposes experiments tha will establish the biochemical basis of this phenomenon, show that it is true of other genes, and test the possibility that certain chemical mutagens may also have a similar strand bias. To accomplish this, he will reproduce the strand-specific mutations in vitro and test several predictions regarding thes mutations based on current understanding of transcription in E. coli. The results from this work should create a new perspective on the action of mutagens and provide a greater understanding of the process of transcript elongation.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM057200-04
Application #
6386832
Study Section
Chemical Pathology Study Section (CPA)
Program Officer
Wolfe, Paul B
Project Start
1998-06-01
Project End
2004-05-31
Budget Start
2001-06-01
Budget End
2004-05-31
Support Year
4
Fiscal Year
2001
Total Cost
$213,391
Indirect Cost
Name
Wayne State University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
City
Detroit
State
MI
Country
United States
Zip Code
48202
Owiti, Norah; Wei, Shanqiao; Bhagwat, Ashok S et al. (2018) Unscheduled DNA synthesis leads to elevated uracil residues at highly transcribed genomic loci in Saccharomyces cerevisiae. PLoS Genet 14:e1007516
Bhagwat, Ashok S; Hao, Weilong; Townes, Jesse P et al. (2016) Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli. Proc Natl Acad Sci U S A 113:2176-81
Green, Abby M; Landry, Sébastien; Budagyan, Konstantin et al. (2016) APOBEC3A damages the cellular genome during DNA replication. Cell Cycle 15:998-1008
Siriwardena, Sachini U; Chen, Kang; Bhagwat, Ashok S (2016) Functions and Malfunctions of Mammalian DNA-Cytosine Deaminases. Chem Rev 116:12688-12710
Wei, Shanqiao; Shalhout, Sophia; Ahn, Young-Hoon et al. (2015) A versatile new tool to quantify abasic sites in DNA and inhibit base excision repair. DNA Repair (Amst) 27:9-18
Siriwardena, Sachini U; Guruge, Thisari A; Bhagwat, Ashok S (2015) Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine. J Mol Biol 427:3042-55
Jinks-Robertson, Sue; Bhagwat, Ashok S (2014) Transcription-associated mutagenesis. Annu Rev Genet 48:341-59
Anton, Brian P; Chang, Yi-Chien; Brown, Peter et al. (2013) The COMBREX project: design, methodology, and initial results. PLoS Biol 11:e1001638
Hashimoto, Hideharu; Hong, Samuel; Bhagwat, Ashok S et al. (2012) Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation. Nucleic Acids Res 40:10203-14
Wijesinghe, Priyanga; Bhagwat, Ashok S (2012) Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G. Nucleic Acids Res 40:9206-17

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