The long-term goals of this project are to understand how cell-to-cell signaling systems interface with regionally expressed transcription factors during development to generate correctly proportioned and patterned body parts. The experimental system that will be used is the fruit fly, Drosophila melanogaster. The starting point for these experiments are two genes, homothorax and extradenticle, that are important for specifying the identity of the proximal portion of the appendages in flies. These genes appear to limit or modify the activities of signaling pathways known to operate during appendage development. Both extradenticle and homothorax encode homeodomain-containing transcription factors. However, Extradenticle protein is only nuclear in the presence of Homothorax. In several tissues, Homothorax and Extradenticle are co-expressed with a Zn-finger-containing transcription factor encoded by the teashirt gene and, in the eye, these three proteins are co-expressed with another homeodomain protein encoded by the eyeless gene.
The specific aims for this funding period are to: (1) determine the mechanism by which Extradenticle's nuclear localization is controlled by Homothorax, (2) characterize the roles of homothorax and teashirt in wing and eye development, (3) characterize the genes involved in repressing hth expression during leg development, and (4) characterize the role of novel genes, identified by a forward genetic screen, in proximo-distal patterning in the fly appendages. homothorax and extradenticle both have vertebrate homologs that, when misexpressed, can contribute to leukemias, suggesting that they also play a role in regulating growth and development in vertebrates. In addition, the transcriptional and post-transcriptional regulation of these factors appears similar in vertebrate and fly limb development, suggesting that many of their functions may also be conserved. An understanding of their basic functions in fly development should therefore generate information that is relevant to leukemia, as well as to defects that can occur in vertebrate limb development.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM058575-08
Application #
6990523
Study Section
Special Emphasis Panel (ZRG1-CDF-4 (02))
Program Officer
Haynes, Susan R
Project Start
1999-01-01
Project End
2007-06-30
Budget Start
2006-01-01
Budget End
2007-06-30
Support Year
8
Fiscal Year
2006
Total Cost
$332,355
Indirect Cost
Name
Columbia University (N.Y.)
Department
Biochemistry
Type
Schools of Medicine
DUNS #
621889815
City
New York
State
NY
Country
United States
Zip Code
10032
Newcomb, Susan; Voutev, Roumen; Jory, Aurelie et al. (2018) cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg. PLoS Genet 14:e1007568
Requena, David; Álvarez, Jose Andres; Gabilondo, Hugo et al. (2017) Origins and Specification of the Drosophila Wing. Curr Biol 27:3826-3836.e5
Voutev, Roumen; Mann, Richard S (2017) Bxb1 phage recombinase assists genome engineering in Drosophila melanogaster. Biotechniques 62:37-38
Voutev, Roumen; Mann, Richard S (2016) Streamlined scanning for enhancer elements in Drosophila melanogaster. Biotechniques 60:141-4
Zhou, Tianyin; Shen, Ning; Yang, Lin et al. (2015) Quantitative modeling of transcription factor binding specificities using DNA shape. Proc Natl Acad Sci U S A 112:4654-9
Riley, Todd R; Lazarovici, Allan; Mann, Richard S et al. (2015) Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE. Elife 4:
Abe, Namiko; Dror, Iris; Yang, Lin et al. (2015) Deconvolving the recognition of DNA shape from sequence. Cell 161:307-18
Agelopoulos, Marios; McKay, Daniel J; Mann, Richard S (2014) cgChIP: a cell type- and gene-specific method for chromatin analysis. Methods Mol Biol 1196:291-306
Slattery, Matthew; Voutev, Roumen; Ma, Lijia et al. (2013) Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. PLoS Genet 9:e1003753
Oh, Hyangyee; Slattery, Matthew; Ma, Lijia et al. (2013) Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes. Cell Rep 3:309-18

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