In humans and other multicellular organisms, complex tissues with different cell types must be formed from a uniform population of precursor cells. Cellular differentiation is critical in the development of a mature organism from a single cell, and in generating and replacing differentiated cells from stem cells in adults. Loss of control of differentiation can result in cancer. One pathway by which cell fate is determined is the """"""""Notch"""""""" signaling pathway, a cell-cell communication pathway that relays information between neighboring cells (through a cell surface receptor protein called Notch) and processes this information inside the cell to tailor cell fate as needed. We are investigating the quantitative and structural mechanisms of Notch signaling. We wish to understand how Notch pathway proteins inside the signal-receiving cell control fate. We are studying two distinct Notch signaling processes, each controlled by a distinct cellular regulator (Deltex and CSL). Thermodynamic, biochemical, and high resolution structural analysis of the Deltex, CSL, the Notch receptor, and other effectors will be used to advance understanding of the molecular interactions underlying these cell fate decisions. We will determine how Deltex binds Notch, how it modifies Notch (via ubiquitination), and which receptor proteins pair with which Deltex proteins. Studies will reveal how bivalent recognition of CSL by Notch couples to increase binding strength, and how it allosterically turns this transcription factor on, and how a human virus exploits this pathway. We will test the functional significance of our findings through genetic studies in the fruit fly and transcription assays in cultured cells. We will take advantage of a Structural Genomics Consortium pipeline (University of Toronto) to increase the number of Notch proteins available for biophysical and biochemical analysis. Together, these studies will provide an understanding of Notch signaling that connects atomic structure to quantitative mechanism and function in the organism. Our research to better understand Notch signaling is important to human health, since defects in the Notch pathway lead to various forms of human cancer and to developmental malformities, and may ultimately contribute to treatment of these conditions. Our research is also important for understanding stem cells biology, which is maintained by Notch signaling.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM060001-08
Application #
7613390
Study Section
Macromolecular Structure and Function B Study Section (MSFB)
Program Officer
Flicker, Paula F
Project Start
2001-04-01
Project End
2011-03-31
Budget Start
2009-04-01
Budget End
2010-03-31
Support Year
8
Fiscal Year
2009
Total Cost
$271,305
Indirect Cost
Name
Johns Hopkins University
Department
Physiology
Type
Schools of Medicine
DUNS #
001910777
City
Baltimore
State
MD
Country
United States
Zip Code
21218
Sherry, Kathryn P; Das, Rahul K; Pappu, Rohit V et al. (2017) Control of transcriptional activity by design of charge patterning in the intrinsically disordered RAM region of the Notch receptor. Proc Natl Acad Sci U S A 114:E9243-E9252
Sherry, Kathryn P; Johnson, Scott E; Hatem, Christine L et al. (2015) Effects of Linker Length and Transient Secondary Structure Elements in the Intrinsically Disordered Notch RAM Region on Notch Signaling. J Mol Biol 427:3587-3597
Johnson, Scott E; Barrick, Douglas (2012) Dissecting and circumventing the requirement for RAM in CSL-dependent Notch signaling. PLoS One 7:e39093
Allgood, Andrea Gayle; Barrick, Doug (2011) Mapping the Deltex-binding surface on the notch ankyrin domain using analytical ultracentrifugation. J Mol Biol 414:243-59
Johnson, Scott E; Ilagan, M Xenia G; Kopan, Raphael et al. (2010) Thermodynamic analysis of the CSL x Notch interaction: distribution of binding energy of the Notch RAM region to the CSL beta-trefoil domain and the mode of competition with the viral transactivator EBNA2. J Biol Chem 285:6681-92
Barrick, Doug (2009) Biological regulation via ankyrin repeat folding. ACS Chem Biol 4:19-22
Bertagna, Angela; Toptygin, Dima; Brand, Ludwig et al. (2008) The effects of conformational heterogeneity on the binding of the Notch intracellular domain to effector proteins: a case of biologically tuned disorder. Biochem Soc Trans 36:157-66
Lubman, Olga Y; Ilagan, Ma Xenia G; Kopan, Raphael et al. (2007) Quantitative dissection of the Notch:CSL interaction: insights into the Notch-mediated transcriptional switch. J Mol Biol 365:577-89
Bradley, Christina Marchetti; Barrick, Doug (2006) The notch ankyrin domain folds via a discrete, centralized pathway. Structure 14:1303-12
Zweifel, Mark E; Leahy, Daniel J; Barrick, Doug (2005) Structure and Notch receptor binding of the tandem WWE domain of Deltex. Structure (Camb) 13:1599-611

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