Epigenetic control of gene expression plays important roles in eukaryotic biology. Examples of epigenetic regulation include control of Hox gene expression during development and in differentiated cells, dosage compensation and aging. Many cancers are associated with altered epigenetic regulation, which involves the assembly of higher order chromatin structures. This proposal focuses on studying the molecular mechanisms by which higher order chromatin structures are established and maintained. We use X-ray crystallography as our main tool to study mechanisms by which epigenetic regulators are recruited to the silent genomic loci, structures and functions of histone modification enzymes, and the recognition of histone codes. We will study in parallel the genetically well-characterized mating-type silencing in S. cerevisiae and chromatin-associated proteins in humans. The study should provide mechanistic understanding of heterochromatin assembly in yeast, as well as providing important insights into mechanisms of epigenetic regulation of gene expression in humans. The atomic-resolution structures may also be used to aid the development of therapeutic agents against cancer.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM063716-07
Application #
7578875
Study Section
Macromolecular Structure and Function C Study Section (MSFC)
Program Officer
Preusch, Peter C
Project Start
2001-08-01
Project End
2010-12-31
Budget Start
2009-01-01
Budget End
2009-12-31
Support Year
7
Fiscal Year
2009
Total Cost
$420,573
Indirect Cost
Name
New York University
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
121911077
City
New York
State
NY
Country
United States
Zip Code
10016
Liu, Haiping; Wang, Ju-Yu S; Huang, Ying et al. (2010) Structural basis for methylarginine-dependent recognition of Aubergine by Tudor. Genes Dev 24:1876-81
Li, Yan; Trojer, Patrick; Xu, Chong-Feng et al. (2009) The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate. J Biol Chem 284:34283-95
Connelly, Jessica J; Yuan, Peihua; Hsu, Hao-Chi et al. (2006) Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain. Mol Cell Biol 26:3256-65
Huang, Ying; Myers, Michael P; Xu, Rui-Ming (2006) Crystal structure of the HP1-EMSY complex reveals an unusual mode of HP1 binding. Structure 14:703-12
Hsu, Hao-Chi; Stillman, Bruce; Xu, Rui-Ming (2005) Structural basis for origin recognition complex 1 protein-silence information regulator 1 protein interaction in epigenetic silencing. Proc Natl Acad Sci U S A 102:8519-24
Min, Jinrong; Feng, Qin; Li, Zhizhong et al. (2003) Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase. Cell 112:711-23
Landry, Joseph; Sutton, Ann; Hesman, Tina et al. (2003) Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae. Mol Cell Biol 23:5972-8
Min, Jinrong; Zhang, Yi; Xu, Rui-Ming (2003) Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27. Genes Dev 17:1823-8
Zhang, Zhiguo; Hayashi, Mariko K; Merkel, Olaf et al. (2002) Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing. EMBO J 21:4600-11