We propose investigation of molecular microdosimetry for biological effects due to weak and strong electric fields in multicellular structures. A new simulation method will be used to predict physical quantities: equipotentials (electric fields), transmembrane voltages, current densities and power dissipation density (SAR). The predicted physical quantities will then be used with three classes of biophysical mechanism (1) voltage-gated channels, (2) electroporation and (3) alteration of biochemical processes by local heating) to predict field- induced molecular change, molecular dose (change per cell), and exposure thresholds. As demonstrated in preliminary work, a single simulation/model can describe both weak and strong field bioelectric behavior. The sites of maximum molecular (chemical) change within multicellular structures will be estimated for weak and strong fields.
Aims. We will: (1) Further develop the new bioelectric simulation method for multicellular structures, (2) Develop a molecular microdosimetry approach, (3) Estimate molecular dose for multicellular structures, and (4) Estimate exposure thresholds for various multicellular structures for weak and strong fields by quantitatively comparing molecular dose to molecular change due to other sources. Significance. Weak fields: Understanding molecular change-based thresholds for multicellular structures is a central problem in assessing possible environmental field effects at 50 - 60 Hz, RF and microwave frequencies. Strong fields: In vivo electroporation-based gene therapy, localized anticancer drug delivery, and electrical injury share a common feature with weak fields: Particular tissue regions are expected to be preferentially involved. Previous Work. We have used biophysical mechanism models, molecular change estimates and signal-to-noise ratios to estimate weak field thresholds for isolated cells and multicellular structures, and the biophysical mechanism of electroporation to estimate molecular transport and uptake for strong fields. Methods. We will use established biophysical mechanism models and molecular change signal-to-noise ratio methods. The new simulation method will be run on single CPU microprocessors and (for problems with greater computational complexity) a Beowulf computer cluster.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM063857-03
Application #
6755195
Study Section
Special Emphasis Panel (ZRG1-SSS-X (11))
Program Officer
Lewis, Catherine D
Project Start
2002-04-01
Project End
2006-03-31
Budget Start
2004-04-01
Budget End
2005-03-31
Support Year
3
Fiscal Year
2004
Total Cost
$248,250
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Other Health Professions
Type
Schools of Arts and Sciences
DUNS #
001425594
City
Cambridge
State
MA
Country
United States
Zip Code
02139
Son, Reuben S; Gowrishankar, Thiruvallur R; Smith, Kyle C et al. (2016) Modeling a Conventional Electroporation Pulse Train: Decreased Pore Number, Cumulative Calcium Transport and an Example of Electrosensitization. IEEE Trans Biomed Eng 63:571-80
Kotnik, Tadej; Weaver, James C (2016) Abiotic Gene Transfer: Rare or Rampant? J Membr Biol 249:623-631
Son, Reuben S; Smith, Kyle C; Gowrishankar, Thiruvallur R et al. (2014) Basic features of a cell electroporation model: illustrative behavior for two very different pulses. J Membr Biol 247:1209-28
Smith, Kyle C; Son, Reuben S; Gowrishankar, T R et al. (2014) Emergence of a large pore subpopulation during electroporating pulses. Bioelectrochemistry 100:3-10
Weaver, James C (2013) Estimating the contribution of lightning to microbial evolution: guidance from the Drake equation: comment on ""Lightning-triggered electroporation and electrofusion as possible contributors to natural horizontal gene transfer"" by Tadej Kotnik. Phys Life Rev 10:373-6
Weaver, James C; Smith, Kyle C; Esser, Axel T et al. (2012) A brief overview of electroporation pulse strength-duration space: a region where additional intracellular effects are expected. Bioelectrochemistry 87:236-43
Smith, Kyle C; Weaver, James C (2012) Electrodiffusion of molecules in aqueous media: a robust, discretized description for electroporation and other transport phenomena. IEEE Trans Biomed Eng 59:1514-22
Smith, Kyle C; Weaver, James C (2011) Transmembrane molecular transport during versus after extremely large, nanosecond electric pulses. Biochem Biophys Res Commun 412:8-12
Gowrishankar, T R; Esser, A T; Smith, K C et al. (2011) Intracellular electroporation site distributions: modeling examples for nsPEF and IRE pulse waveforms. Conf Proc IEEE Eng Med Biol Soc 2011:732-5
Esser, Axel T; Smith, Kyle C; Gowrishankar, T R et al. (2010) Mechanisms for the intracellular manipulation of organelles by conventional electroporation. Biophys J 98:2506-14

Showing the most recent 10 out of 24 publications