Electrical interventions in medicine are widespread and growing, but basic interaction mechanisms are often poorly understood. Electroporation is an major example. Conventional electroporation is widely used in biomedical research with empirically adjusted delivery of DNA, proteins, cancer drugs and fluorescent markers into cells. Recently discovered supra-electroporation has limited drug delivery capability, but causes intracellular effects by interactions with organelles. Supra-electroporation also removes cells by triggering apoptosis whereas excessive conventional electroporation leads to necrosis. The great majority of research applications are in vitro, but there is rapidly growing empirical investigation of electroporation in vivo. We propose continued basic investigation of the interaction of electric fields with cells and tissue by using advanced modeling. Although we will consider localized heating and other mechanisms (e.g. voltage-gated channels) we will focus on the fundamental mechanisms for the highly non-linear behavior of electroporation. Throughout our investigation we will create and extend mechanistic hypotheses by creating corresponding, realistic cell- and tissue-level models that can account for the: (1) electrical response to simple and complex applied waveforms, (2) amount of Thicroscopic (cell level) heating, and (3) field-induced transport of particular ions and molecules. Our methods involve coupled electrical, thermal and chemical system models. Each system model consists of a large number of interconnected local models that interact to define a system response. These methods allow us to create cell models with realistic, irregular shapes for the outer plasma membrane and also for internal organelle membranes. Our cell-level models can be integrated with tissue-level models for electrical, thermal and chemical responses. Chemical response models can be further expanded to involve pharmacokinetic models. This integrates cell- and tissue-level models to describe chemical changes at the whole body level. We will test our mechanistic-based models by direct comparison of modeling results with published results and experimental findings of our collaborators. This mechanism-based modeling capability will assist engineering of bioelectric interventions by providing preliminary assessment of cellular responses for different pulsing waveforms in a large parameter space. The proposed research is relevant to public health because quantitative mechanistic understanding is critical to developing effective bioelectric medical devices and interventions while minimizing side effects.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM063857-08
Application #
7690312
Study Section
Special Emphasis Panel (ZRG1-SBIB-L (11))
Program Officer
Lewis, Catherine D
Project Start
2002-04-01
Project End
2010-08-31
Budget Start
2009-09-01
Budget End
2010-08-31
Support Year
8
Fiscal Year
2009
Total Cost
$261,724
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Other Health Professions
Type
Schools of Arts and Sciences
DUNS #
001425594
City
Cambridge
State
MA
Country
United States
Zip Code
02139
Son, Reuben S; Gowrishankar, Thiruvallur R; Smith, Kyle C et al. (2016) Modeling a Conventional Electroporation Pulse Train: Decreased Pore Number, Cumulative Calcium Transport and an Example of Electrosensitization. IEEE Trans Biomed Eng 63:571-80
Kotnik, Tadej; Weaver, James C (2016) Abiotic Gene Transfer: Rare or Rampant? J Membr Biol 249:623-631
Son, Reuben S; Smith, Kyle C; Gowrishankar, Thiruvallur R et al. (2014) Basic features of a cell electroporation model: illustrative behavior for two very different pulses. J Membr Biol 247:1209-28
Smith, Kyle C; Son, Reuben S; Gowrishankar, T R et al. (2014) Emergence of a large pore subpopulation during electroporating pulses. Bioelectrochemistry 100:3-10
Weaver, James C (2013) Estimating the contribution of lightning to microbial evolution: guidance from the Drake equation: comment on ""Lightning-triggered electroporation and electrofusion as possible contributors to natural horizontal gene transfer"" by Tadej Kotnik. Phys Life Rev 10:373-6
Weaver, James C; Smith, Kyle C; Esser, Axel T et al. (2012) A brief overview of electroporation pulse strength-duration space: a region where additional intracellular effects are expected. Bioelectrochemistry 87:236-43
Smith, Kyle C; Weaver, James C (2012) Electrodiffusion of molecules in aqueous media: a robust, discretized description for electroporation and other transport phenomena. IEEE Trans Biomed Eng 59:1514-22
Smith, Kyle C; Weaver, James C (2011) Transmembrane molecular transport during versus after extremely large, nanosecond electric pulses. Biochem Biophys Res Commun 412:8-12
Gowrishankar, T R; Esser, A T; Smith, K C et al. (2011) Intracellular electroporation site distributions: modeling examples for nsPEF and IRE pulse waveforms. Conf Proc IEEE Eng Med Biol Soc 2011:732-5
Esser, Axel T; Smith, Kyle C; Gowrishankar, T R et al. (2010) Mechanisms for the intracellular manipulation of organelles by conventional electroporation. Biophys J 98:2506-14

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