Our long-term goal is a better understanding of how important metal containing enzymes work. In this proposal, we focus on metalloenzymes that contain both Fe and a different metal (Ni, Mo, V) at the active site. Three of the enzyme active sites (NiFe hydrogenase, CO dehydrogenase, and acetyl-CoA synthase) contain combinations of Fe and Ni. The other enzyme, nitrogenase, employs V or Mo at one end of a MFe7S8 cluster. Despite progress by x-ray diffraction (or electron microscopy) techniques, many questions about the molecular and electronic structure need to be resolved. The catalytic mechanisms are still poorly understood. The molecular structure of the Ni sites will be studied using extended x-ray absorption fine structure (EXAFS) analysis of crystals of H2ase and CODH. Samples containing only the CO oxidation (C-cluster) and ACS (A-cluster) sites will also be examined. Although these enzymes have already been studied by EXAFS, the proposed samples and range-extended analysis techniques should yield more details about the Ni sites. The electronic structure of the Ni and V sites will be probed using x-ray resonance Raman spectroscopy (XRRS or RIXS). Analysis of these spectra will reveal the best description of the Ni and V oxidation and spin states under a variety of conditions. The Fe- and Ni-centered vibrational density of states will be studied using the vibrational Mossbauer spectroscopy. This approach will help identify the sites of important M-H and metal-substrate interactions. An instrument will be built to allow on-campus experiments. The above enzymes are important for maintaining our environment. Fe proteins also play key roles in human health and disease. The proposed work will enhance our knowledge of Fe biochemistry, and the spectroscopic techniques under development will have applications to a wide range of bioinorganic problems.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
1R01GM065440-01
Application #
6465349
Study Section
Metallobiochemistry Study Section (BMT)
Program Officer
Flicker, Paula F
Project Start
2002-03-01
Project End
2006-02-28
Budget Start
2002-03-01
Budget End
2003-02-28
Support Year
1
Fiscal Year
2002
Total Cost
$259,054
Indirect Cost
Name
University of California Davis
Department
Miscellaneous
Type
Schools of Engineering
DUNS #
094878337
City
Davis
State
CA
Country
United States
Zip Code
95618
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Gee, Leland B; Wang, Hongxin; Cramer, Stephen P (2018) NRVS for Fe in Biology: Experiment and Basic Interpretation. Methods Enzymol 599:409-425
Pelmenschikov, Vladimir; Gee, Leland B; Wang, Hongxin et al. (2018) High-Frequency Fe-H Vibrations in a Bridging Hydride Complex Characterized by NRVS and DFT. Angew Chem Int Ed Engl 57:9367-9371
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O'Dowd, Bing; Williams, Sarah; Wang, Hongxin et al. (2017) Spectroscopic and Computational Investigations of Ligand Binding to IspH: Discovery of Non-diphosphate Inhibitors. Chembiochem 18:914-920
Reijerse, Edward J; Pham, Cindy C; Pelmenschikov, Vladimir et al. (2017) Direct Observation of an Iron-Bound Terminal Hydride in [FeFe]-Hydrogenase by Nuclear Resonance Vibrational Spectroscopy. J Am Chem Soc 139:4306-4309
Pelmenschikov, Vladimir; Birrell, James A; Pham, Cindy C et al. (2017) Reaction Coordinate Leading to H2 Production in [FeFe]-Hydrogenase Identified by Nuclear Resonance Vibrational Spectroscopy and Density Functional Theory. J Am Chem Soc 139:16894-16902
Li, Yulong; Rauchfuss, Thomas B (2016) Synthesis of Diiron(I) Dithiolato Carbonyl Complexes. Chem Rev 116:7043-77
Lauterbach, Lars; Gee, Leland B; Pelmenschikov, Vladimir et al. (2016) Characterization of the [3Fe-4S](0/1+) cluster from the D14C variant of Pyrococcus furiosus ferredoxin via combined NRVS and DFT analyses. Dalton Trans 45:7215-9
Serrano, Pauline N; Wang, Hongxin; Crack, Jason C et al. (2016) Nitrosylation of Nitric-Oxide-Sensing Regulatory Proteins Containing [4Fe-4S] Clusters Gives Rise to Multiple Iron-Nitrosyl Complexes. Angew Chem Int Ed Engl 55:14575-14579

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