Multiple DNA repair pathways have evolved to maintain genomic integrity in the face of a constant barrage of genotoxic agents. Defects in various DNA repair mechanisms result in a strong predisposition to cancer. In addition to DNA repair pathways, the replication checkpoint plays an important role. In response to S-phase insults, the replication checkpoint maintains genomic stability by coordinating cellular responses such as; cell-cycle arrest, fork stabilization and DNA repair. Cancer risk is elevated by mutations in human proteins that are required for the replication checkpoint. This proposal is aimed at exploring the important interface between DNA repair and the replication checkpoint, about which little is known. These studies will employ the fission yeast, Schizosaccharomyces pombe, which has proven invaluable in the analysis of DNA repair and checkpoint pathways that are conserved in humans. The DNA repair protein Rad60 interacts with the replication checkpoint kinase, Cdsl. Rad60 is part of the essential Smc5-Smc6 complex that is required for DNA repair and genomic integrity. Rad60 is subject to Cdsl-dependent regulation and therefore, the first aim is to uncouple Cdsl-Rad60 communication and study the effects on genomic stability.
The second aim focusses on understanding the function of Rad60, which in turn should reveal an important mechanism through which Cdsl maintains the genome.
The third aim i s to explore the function of the Smc5-Smc6 complex, of which Rad60 is a part. The Smc5-Smc6 complex likely plays a role in chromosome structure and thereby facilitates DNA repair. Little is known about the role of chromatin structure in DNA repair and therefore these studies will help elucidate this connection. Results obtained in this study will likely prime analogous studies of the human homologues of the above proteins, resulting in a better understanding of the interface between the replication checkpoint and DNA repair in humans.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM068608-04
Application #
7078607
Study Section
Chemical Pathology Study Section (CPA)
Program Officer
Portnoy, Matthew
Project Start
2003-07-01
Project End
2008-06-30
Budget Start
2006-07-01
Budget End
2007-06-30
Support Year
4
Fiscal Year
2006
Total Cost
$320,756
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Zilio, Nicola; Boddy, Michael N (2017) Improved Tandem Affinity Purification Tag and Methods for Isolation of Proteins and Protein Complexes from Schizosaccharomyces pombe. Cold Spring Harb Protoc 2017:
Nie, Minghua; Moser, Bettina A; Nakamura, Toru M et al. (2017) SUMO-targeted ubiquitin ligase activity can either suppress or promote genome instability, depending on the nature of the DNA lesion. PLoS Genet 13:e1006776
Nie, Minghua; Boddy, Michael N (2017) Large-Scale Purification of Small Ubiquitin-Like Modifier (SUMO)-Modified Proteins from Schizosaccharomyces pombe. Cold Spring Harb Protoc 2017:
Nie, Minghua; Arner, Emily; Prudden, John et al. (2016) Functional Crosstalk between the PP2A and SUMO Pathways Revealed by Analysis of STUbL Suppressor, razor 1-1. PLoS Genet 12:e1006165
Nie, Minghua; Boddy, Michael N (2016) Cooperativity of the SUMO and Ubiquitin Pathways in Genome Stability. Biomolecules 6:14
Nie, Minghua; Vashisht, Ajay A; Wohlschlegel, James A et al. (2015) High Confidence Fission Yeast SUMO Conjugates Identified by Tandem Denaturing Affinity Purification. Sci Rep 5:14389
Nie, Minghua; Boddy, Michael N (2015) Pli1(PIAS1) SUMO ligase protected by the nuclear pore-associated SUMO protease Ulp1SENP1/2. J Biol Chem 290:22678-85
Zilio, Nicola; Codlin, Sandra; Vashisht, Ajay A et al. (2014) A novel histone deacetylase complex in the control of transcription and genome stability. Mol Cell Biol 34:3500-14
Groocock, Lynda M; Nie, Minghua; Prudden, John et al. (2014) RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response. EMBO Rep 15:601-8
Wehrkamp-Richter, Sophie; Hyppa, Randy W; Prudden, John et al. (2012) Meiotic DNA joint molecule resolution depends on Nse5-Nse6 of the Smc5-Smc6 holocomplex. Nucleic Acids Res 40:9633-46

Showing the most recent 10 out of 25 publications