The long-term goal of the proposed research is to better understand the molecular basis of circadian rhythms in eukaryotes. These studies will be carried out in Arabidopsis thaliana, a model organism well suited to genetic and biochemical approaches. Although putative clock components have been identified in Arabidopsis, the mechanism by which they regulate circadian rhythms is unclear. In addition, the means by which the central clock controls outputs so that they occur at the most advantageous time of day is unknown. The proposed studies use genetic and biochemical approaches to address these fundamental questions. First, a gene responsible for altered circadian regulation will be positionally cloned and other cloning projects will be initiated. Second, the mechanism by which the clock controls phase-specific gene regulation will be explored and a novel clock-regulated transcriptional activator identified. These studies will greatly improve our understanding of clock regulatory mechanisms, information that ultimately may be used to improve human health through treatment of circadian disorders.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM069418-02
Application #
6850885
Study Section
Genetics Study Section (GEN)
Program Officer
Tompkins, Laurie
Project Start
2004-03-01
Project End
2009-02-28
Budget Start
2005-03-01
Budget End
2006-02-28
Support Year
2
Fiscal Year
2005
Total Cost
$215,325
Indirect Cost
Name
University of California Davis
Department
Type
Schools of Arts and Sciences
DUNS #
047120084
City
Davis
State
CA
Country
United States
Zip Code
95618
Harmer, Stacey L; Brooks, Christopher J (2018) Growth-mediated plant movements: hidden in plain sight. Curr Opin Plant Biol 41:89-94
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Müller-Moulé, Patricia; Nozue, Kazunari; Pytlak, Melissa L et al. (2016) YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance. PeerJ 4:e2574
Brady, Siobhan M; Burow, Meike; Busch, Wolfgang et al. (2015) Reassess the t Test: Interact with All Your Data via ANOVA. Plant Cell 27:2088-94
Jones, Matthew Alan; Hu, Wei; Litthauer, Suzanne et al. (2015) A Constitutively Active Allele of Phytochrome B Maintains Circadian Robustness in the Absence of Light. Plant Physiol 169:814-25
Hsu, Polly Yingshan; Harmer, Stacey L (2014) Global profiling of the circadian transcriptome using microarrays. Methods Mol Biol 1158:45-56
Hsu, Polly Yingshan; Harmer, Stacey L (2014) Wheels within wheels: the plant circadian system. Trends Plant Sci 19:240-9
Anver, Shajahan; Roguev, Assen; Zofall, Martin et al. (2014) Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. EMBO Rep 15:894-902

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