During development, differential gene expression governs generation of the cellular diversity required for establishment of pattern formation and organogenesis. An important mechanism to ensure proper temporal and spatial gene expression throughout development is regulation at the transcriptional level. Regulation of transcription is a highly dynamic cellular process involving a complex array of protein-protein and protein-DNA interactions. Studies in yeast (Saccharomyces cerevisiae) and fruit fly (Drosophila melanogaster) implicate a number of regulatory proteins, both general and gene-specific, as well as regulatory mechanisms integral to this process. Key classes of factors in transcriptional regulation are those that modulate chromatin structure. Chromatin remodeling is of fundamental importance because it affects the conformation and position of nucleosomes, which, if situated at promoter elements, can prevent RNA polymerase II holoenzyme from accessing DNA and initiating transcription. Mammalian SWI/SNF-related complexes utilize either brahma (Brm) or brahma-related gene 1 (Brgl) catalytic subunits to remodel nucleosomes in an ATP-dependent manner. A Brgl null mutation was produced and homozygotes die at implantation, but, because BrgI mRNA and protein are expressed at high levels in the oocyte, experiments have been designed to determine whether Brgl is required for zygotic genome activation. Interpretation of the peri-implantation phenotype has also been complicated by the fact that Brgl is the catalytic subunit of two distinct, but related, chromatin-remodeling complexes. Therefore, mice deficient for complex-specific subunits will be created to assess the relative importance of each complex. Finally, to move beyond implantation and elucidate Brgl function at later stages of embryonic and post-natal development, ENEJ mutagenesis and Cre-loxP conditional gene targeting is being used to examine its role in the development of the hematopoietic system.

Agency
National Institute of Health (NIH)
Institute
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD)
Type
Research Project (R01)
Project #
5R01HD036655-07
Application #
6745145
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Moody, Sally Ann
Project Start
1999-01-01
Project End
2007-06-30
Budget Start
2004-07-01
Budget End
2005-06-30
Support Year
7
Fiscal Year
2004
Total Cost
$326,614
Indirect Cost
Name
University of North Carolina Chapel Hill
Department
Genetics
Type
Schools of Medicine
DUNS #
608195277
City
Chapel Hill
State
NC
Country
United States
Zip Code
27599
Runge, John S; Raab, Jesse R; Magnuson, Terry (2018) Identification of Two Distinct Classes of the Human INO80 Complex Genome-Wide. G3 (Bethesda) 8:1095-1102
Dronamraju, Raghuvar; Hepperla, Austin J; Shibata, Yoichiro et al. (2018) Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription. Mol Cell 70:1054-1066.e4
Raab, Jesse R; Runge, John S; Spear, Camarie C et al. (2017) Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits. Epigenetics Chromatin 10:62
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Serber, Daniel W; Runge, John S; Menon, Debashish U et al. (2016) The Mouse INO80 Chromatin-Remodeling Complex Is an Essential Meiotic Factor for Spermatogenesis. Biol Reprod 94:8
Runge, John S; Raab, Jesse R; Magnuson, Terry (2016) Epigenetic Regulation by ATP-Dependent Chromatin-Remodeling Enzymes: SNF-ing Out Crosstalk. Curr Top Dev Biol 117:1-13
Chandler, Ronald L; Magnuson, Terry (2016) The SWI/SNF BAF-A complex is essential for neural crest development. Dev Biol 411:15-24
Chandler, Ronald L; Raab, Jesse R; Vernon, Mike et al. (2015) Global gene expression profiling of a mouse model of ovarian clear cell carcinoma caused by ARID1A and PIK3CA mutations implicates a role for inflammatory cytokine signaling. Genom Data 5:329-32
Raab, Jesse R; Resnick, Samuel; Magnuson, Terry (2015) Genome-Wide Transcriptional Regulation Mediated by Biochemically Distinct SWI/SNF Complexes. PLoS Genet 11:e1005748
Chandler, Ronald L; Damrauer, Jeffrey S; Raab, Jesse R et al. (2015) Coexistent ARID1A-PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling. Nat Commun 6:6118

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