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Ruan, Shuxiang; Stormo, Gary D (2018) Comparison of discriminative motif optimization using matrix and DNA shape-based models. BMC Bioinformatics 19:86
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Chang, Yiming K; Zuo, Zheng; Stormo, Gary D (2018) Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq. BMC Mol Biol 19:5
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Ruan, Shuxiang; Swamidass, S Joshua; Stormo, Gary D (2017) BEESEM: estimation of binding energy models using HT-SELEX data. Bioinformatics 33:2288-2295
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Chang, Yiming K; Srivastava, Yogesh; Hu, Caizhen et al. (2017) Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq. Nucleic Acids Res 45:832-845
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Hu, Caizhen; Malik, Vikas; Chang, Yiming Kenny et al. (2017) Coop-Seq Analysis Demonstrates that Sox2 Evokes Latent Specificities in the DNA Recognition by Pax6. J Mol Biol 429:3626-3634
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Roy, Basab; Zuo, Zheng; Stormo, Gary D (2017) Quantitative specificity of STAT1 and several variants. Nucleic Acids Res 45:8199-8207
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Xiao, Shu; Lu, Jia; Sridhar, Bharat et al. (2017) SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination. Cell Rep 18:3117-3128
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Zuo, Zheng; Roy, Basab; Chang, Yiming Kenny et al. (2017) Measuring quantitative effects of methylation on transcription factor-DNA binding affinity. Sci Adv 3:eaao1799
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Ruan, Shuxiang; Stormo, Gary D (2017) Inherent limitations of probabilistic models for protein-DNA binding specificity. PLoS Comput Biol 13:e1005638
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Stormo, Gary D; Roy, Basab (2016) DNA Structure Helps Predict Protein Binding. Cell Syst 3:216-218
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Showing the most recent 10 out of 109 publications
