The long range goals of this research are to discover a potential therapeutic agent to treat Sickle Cell anemia, develop allosteric inhibitors of hemoglobin for ischemic diseases and for radiation oncology, and to advance the fundamental understanding of small molecule - large molecule interactions. A combination of research fields will continue to be employed in our studies with extensive use of X-ray crystallographic and molecular modeling techniques to discover lead molecules and to elucidate mechanisms of action of active compounds at the molecular level. The corresponding molecules will be synthesized and solution and cellular studies will be conducted to evaluate the in vitro activity and potential toxicity problems of new molecules. We have advanced one compound from basic laboratory studies to the clinic testing phase with an IND from the FDA.
Our specific aims i nclude the: synthesis and testing of pro-drug like analogues of antisickling agents; synthesis and testing of other aromatic aldehydes and derivatives of non-toxic starting materials or natural products as potential antisickling agents; design, synthesize and testing of new allosteric modulators of hemoglobin; determination of the deoxy- incubated Hb binding sites for the antisickling drug 12C79 (the first therapeutic agent designed de novo from the 3D structure of hemoglobin to reach clinical trials) and solution binding measurements; determination of the solution binding constants of active antisickling agents and four classes of hemoglobin allosteric effectors; determination of the effects of antisickling agents and allosteric inhibitors on the oxygen dissociation curve of hemoglobin solutions; comparison of the solution binding constants with the P50 values for allosteric inhibitors to ascertain whether the intrinsic activity can be observed with a protein system; determination of the binding sites and interactions of active molecules crystallographically; evaluation of the binding sites for positive and negative polar and hydrophobic interactions using the new computer software (HINT) developed during the previous proposal; further development of the HINT software; measurement of the rheological effect of active compounds on erythrocytes; evaluation of allosteric inhibitors an anti-ischemic agents in a variety of in vitro and in vivo systems and measurement of blood levels and the % hemoglobin reaction in human subjects.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Research Project (R01)
Project #
5R01HL032793-12
Application #
2217084
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Project Start
1988-06-01
Project End
1997-05-31
Budget Start
1995-06-01
Budget End
1996-05-31
Support Year
12
Fiscal Year
1995
Total Cost
Indirect Cost
Name
Virginia Commonwealth University
Department
Pharmacology
Type
Schools of Pharmacy
DUNS #
City
Richmond
State
VA
Country
United States
Zip Code
23298
Safo, M K; Abraham, D J (2005) The enigma of the liganded hemoglobin end state: a novel quaternary structure of human carbonmonoxy hemoglobin. Biochemistry 44:8347-59
Kellogg, Glen E; Fornabaio, Micaela; Spyrakis, Francesca et al. (2004) Getting it right: modeling of pH, solvent and ""nearly"" everything else in virtual screening of biological targets. J Mol Graph Model 22:479-86
Fornabaio, Micaela; Spyrakis, Francesca; Mozzarelli, Andrea et al. (2004) Simple, intuitive calculations of free energy of binding for protein-ligand complexes. 3. The free energy contribution of structural water molecules in HIV-1 protease complexes. J Med Chem 47:4507-16
Fornabaio, Micaela; Cozzini, Pietro; Mozzarelli, Andrea et al. (2003) Simple, intuitive calculations of free energy of binding for protein-ligand complexes. 2. Computational titration and pH effects in molecular models of neuraminidase-inhibitor complexes. J Med Chem 46:4487-500
Safo, Martin K; Burnett, James C; Musayev, Faik N et al. (2002) Structure of human carbonmonoxyhemoglobin at 2.16 A: a snapshot of the allosteric transition. Acta Crystallogr D Biol Crystallogr 58:2031-7
Cozzini, Pietro; Fornabaio, Micaela; Marabotti, Anna et al. (2002) Simple, intuitive calculations of free energy of binding for protein-ligand complexes. 1. Models without explicit constrained water. J Med Chem 45:2469-83
Safo, Martin K; Boyiri, Telih; Burnett, James C et al. (2002) X-ray crystallographic analyses of symmetrical allosteric effectors of hemoglobin: compounds designed to link primary and secondary binding sites. Acta Crystallogr D Biol Crystallogr 58:634-44
Youssef, Amal Mamdouh; Safo, Martin K; Danso-Danquah, Richmond et al. (2002) Synthesis and X-ray studies of chiral allosteric modifiers of hemoglobin. J Med Chem 45:1184-95
Safo, M K; Musayev, F N; Wu, S H et al. (2001) Structure of tetragonal crystals of human erythrocyte catalase. Acta Crystallogr D Biol Crystallogr 57:1-7
Kellogg, G E; Burnett, J C; Abraham, D J (2001) Very empirical treatment of solvation and entropy: a force field derived from log Po/w. J Comput Aided Mol Des 15:381-93

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