Agency
National Institute of Health (NIH)
Institute
National Library of Medicine (NLM)
Type
Research Project (R01)
Project #
5R01LM004969-09
Application #
2237677
Study Section
Biomedical Library and Informatics Review Committee (BLR)
Project Start
1988-08-01
Project End
1999-07-31
Budget Start
1996-08-01
Budget End
1997-07-31
Support Year
9
Fiscal Year
1996
Total Cost
Indirect Cost
Name
University of Virginia
Department
Biochemistry
Type
Schools of Medicine
DUNS #
001910777
City
Charlottesville
State
VA
Country
United States
Zip Code
22904
Pearson, William R; Mackey, Aaron J (2017) Using SQL Databases for Sequence Similarity Searching and Analysis. Curr Protoc Bioinformatics 59:9.4.1-9.4.22
Pearson, William R (2016) Finding Protein and Nucleotide Similarities with FASTA. Curr Protoc Bioinformatics 53:3.9.1-25
Triant, Deborah A; Pearson, William R (2015) Most partial domains in proteins are alignment and annotation artifacts. Genome Biol 16:99
Pearson, William R (2013) An introduction to sequence similarity (""homology"") searching. Curr Protoc Bioinformatics Chapter 3:Unit3.1
Pearson, William R (2013) Selecting the Right Similarity-Scoring Matrix. Curr Protoc Bioinformatics 43:3.5.1-9
Mills, Lauren J; Pearson, William R (2013) Adjusting scoring matrices to correct overextended alignments. Bioinformatics 29:3007-13
Li, Weizhong; McWilliam, Hamish; Goujon, Mickael et al. (2012) PSI-Search: iterative HOE-reduced profile SSEARCH searching. Bioinformatics 28:1650-1
Holliday, Gemma L; Andreini, Claudia; Fischer, Julia D et al. (2012) MACiE: exploring the diversity of biochemical reactions. Nucleic Acids Res 40:D783-9
Gonzalez, Mileidy W; Pearson, William R (2010) RefProtDom: a protein database with improved domain boundaries and homology relationships. Bioinformatics 26:2361-2
Sierk, Michael L; Smoot, Michael E; Bass, Ellen J et al. (2010) Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments. BMC Bioinformatics 11:146

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