Hemophilia B is a blood clotting disorder caused by mutations in the F9 gene, encoding the blood coagulation factor IX (FIX). Over 130 different non-synonymous mutations in F9 (which change encoded amino acids) and at least 10 synonymous mutations (which do not change the encoded amino acids) cause the disease. However, the effects of only a few have been analyzed to determine the exact mechanism(s) by which these mutations contribute to FIX deficiency. Such knowledge is extremely important as these studies in particular might help to improve the design of recombinant protein therapeutics. This proposal is focused on understanding the exact effects produced by 3 non-synonymous (Val30Ile, Leu383Ile and Ala436Val) and 3 synonymous mutations (Val107Val, Arg162Arg and Gln237Gln) on the expressions, structure/activity of FIX. We will conduct a comprehensive analysis of these mutations using in vitro (cell-free) and ex vivo (cell culture) systems to assess their exact impact on FIX function. This project will add to our understanding of the relationship between genotype and phenotype.

Public Health Relevance

Hemophilia B is a blood clotting disorder caused by numerous mutations in the F9 gene, which encodes a serine protease in the blood coagulation system known as factor IX. However, the effects on the molecular level of only a few non-synonymous mutations and none of the synonymous ones in F9 open reading frame have been analyzed to determine the exact mechanism(s) by which these mutations contribute to FIX deficiency. This proposal is aimed at understanding of the exact effects produced by 3 non-synonymous and 3 synonymous mutations in F9 which cause severe and mild hemophilia B, respectively.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Academic Research Enhancement Awards (AREA) (R15)
Project #
1R15HL121779-01A1
Application #
8752096
Study Section
Special Emphasis Panel (ZRG1-VH-C (80))
Program Officer
Link, Rebecca P
Project Start
2014-08-01
Project End
2017-07-31
Budget Start
2014-08-01
Budget End
2015-07-31
Support Year
1
Fiscal Year
2014
Total Cost
$436,500
Indirect Cost
$136,500
Name
Cleveland State University
Department
Type
Schools of Arts and Sciences
DUNS #
010841617
City
Cleveland
State
OH
Country
United States
Zip Code
44115
Arndt, Nick; Ross-Kaschitza, Daniela; Kojukhov, Artyom et al. (2018) Properties of the ternary complex formed by yeast eIF4E, p20 and mRNA. Sci Rep 8:6707
Zinoviev, Alexandra; Goyal, Akanksha; Jindal, Supriya et al. (2018) Functions of unconventional mammalian translational GTPases GTPBP1 and GTPBP2. Genes Dev 32:1226-1241
Komar, Anton A (2018) Unraveling co-translational protein folding: Concepts and methods. Methods 137:71-81
Simhadri, Vijaya L; Hamasaki-Katagiri, Nobuko; Lin, Brian C et al. (2017) Single synonymous mutation in factor IX alters protein properties and underlies haemophilia B. J Med Genet 54:338-345
Hamasaki-Katagiri, N; Lin, B C; Simon, J et al. (2017) The importance of mRNA structure in determining the pathogenicity of synonymous and non-synonymous mutations in haemophilia. Haemophilia 23:e8-e17
Buhr, Florian; Jha, Sujata; Thommen, Michael et al. (2016) Synonymous Codons Direct Cotranslational Folding toward Different Protein Conformations. Mol Cell 61:341-351
Singh, Jagjit; Sikand, Kavleen; Conrad, Heike et al. (2016) U6atac snRNA stem-loop interacts with U12 p65 RNA binding protein and is functionally interchangeable with the U12 apical stem-loop III. Sci Rep 6:31393
Komar, Anton A (2016) The Yin and Yang of codon usage. Hum Mol Genet 25:R77-R85
Komar, Anton A; Hatzoglou, Maria (2015) Exploring Internal Ribosome Entry Sites as Therapeutic Targets. Front Oncol 5:233