The goal of this application is to obtain high-resolution structural and dynamics information for the full-length, trimeric HIV-1 envelope glycoprotein (Env) to dissect the conformational changes that occur in Env during receptor binding and fusion using cutting-edge integrative structural biology approaches. The findings will yield valuable insights into the Env structure, changes in epitope exposure during viral entry, conformational rearrangements that lead to fusion, and stabilization of particular conformational states by broadly neutralizing antibodies that enhance potency and breadth. Specifically, the application proposes: 1) To structurally characterize full-length HIV-1 trimers at high resolution; 2) To create soluble mimetics of Env trimers that contain the membrane proximal external region; and 3) To study the dynamic nature of native Env trimers. Towards this end, this highly integrated program utilizes cutting edge x-ray crystallography, electron microscopy and single molecule Fluorescence Resonance Energy Transfer methods as well as other biophysical techniques to probe the different conformational states of HIV-1 Env that pertain to its function in viral entry and neutralization by the human immune system. These new insights will likely prove invaluable for vaccine design or for design of fusion inhibitors to prevent and treat HIV-1 infection.

Public Health Relevance

This project aims to advance our understanding of HIV-1 entry and, hence, further the search for safe and effective prophylactic HIV vaccines and drugs to combat HIV-1, thereby saving millions of lives as well as enhancing the quality of life of those living with HIV/AIDS. Investigation of the structure, function and dynamics of full-length HIV-1 Envelope trimers in complex with receptor, co-receptors, broadly neutralizing antibodies and small molecules will aid in design of vaccines and entry inhibitors.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
High Priority, Short Term Project Award (R56)
Project #
2R56AI084817-06
Application #
9036580
Study Section
AIDS Molecular and Cellular Biology Study Section (AMCB)
Program Officer
Li, Yen
Project Start
2009-09-01
Project End
2016-03-31
Budget Start
2015-04-10
Budget End
2016-03-31
Support Year
6
Fiscal Year
2015
Total Cost
$592,688
Indirect Cost
$213,094
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
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Sarkar, Anita; Bale, Shridhar; Behrens, Anna-Janina et al. (2018) Structure of a cleavage-independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer. Nat Commun 9:1956
He, Linling; Lin, Xiaohe; de Val, Natalia et al. (2017) Hidden Lineage Complexity of Glycan-Dependent HIV-1 Broadly Neutralizing Antibodies Uncovered by Digital Panning and Native-Like gp140 Trimer. Front Immunol 8:1025
Guenaga, Javier; Garces, Fernando; de Val, Natalia et al. (2017) Glycine Substitution at Helix-to-Coil Transitions Facilitates the Structural Determination of a Stabilized Subtype C HIV Envelope Glycoprotein. Immunity 46:792-803.e3
Irimia, Adriana; Serra, Andreia M; Sarkar, Anita et al. (2017) Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog 13:e1006212
Koch, Kathrin; Kalusche, Sarah; Torres, Jonathan L et al. (2017) Selection of nanobodies with broad neutralizing potential against primary HIV-1 strains using soluble subtype C gp140 envelope trimers. Sci Rep 7:8390
Polonskaya, Zinaida; Deng, Shenglou; Sarkar, Anita et al. (2017) T cells control the generation of nanomolar-affinity anti-glycan antibodies. J Clin Invest 127:1491-1504
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MacLeod, Daniel T; Choi, Nancy M; Briney, Bryan et al. (2016) Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch. Immunity 44:1215-26
He, Linling; de Val, Natalia; Morris, Charles D et al. (2016) Presenting native-like trimeric HIV-1 antigens with self-assembling nanoparticles. Nat Commun 7:12041

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