An expansion and upgrade to our Rigaku Macromolecular X-ray generator and detector system is requested. The expansion is a complete second X-ray port apparatus consisting of a Saturn 944 HG CCD detector VariMax HF Arc)Sec confocal optic, Oxford Cobra Cryostream cryo-cooling system, AFC11 Partial- 4 axis goniometer, video system for crystal centering and computer control. The instrument is located in the macromolecular X-ray core facility at the Yale University School of Medicine. These components will provide an experimental system with significantly increased X-ray fluence and detector sensitivity combined with dramatically faster data collection times. The improvements will facilitate currently unachievable experiments to be conducted in-house;thus, the proposed expansion is essential to completion of the NIH-funded research of the 8 major users, 1 minor user and 1 user funded by non-NIH sources.
The aims of the research are to understand the molecular-level details of topics that include receptor tyrosine kinase dysregulation and inhibition in cancer, HIV reverse transcriptase function and novel therapeutic strategies for AIDS, integrin signaling cascades, regulation of serine/threonine kinases, regulation of non-receptor tyrosine kinases, regulation of calcium permeable TRP channels, GTPase signaling cascades, membrane proteases, chemokine signaling, membrane trafficking and neurotransmitter transporters. The institution (Yale University School of Medicine) has recently invested significantly in the structural biology core facility by renovations and purchase of crystallization robotics, a crystal plate imaging system, an HPLC for SEC with MALS, and an isothermal titration calorimetry system. The institution has offered significant additional supportif this proposal is successful.

Public Health Relevance

The proposed upgraded macromolecular X-ray generator and detector system will provide essential improvements that will allow completion of currently NIH-funded research. The atomic-level details of the proteins studied by the users have direct impact for understanding and therapeutically targeting many human diseases including cancer, myeloproliferative disorders, polycystic kidney disease, cerebral cavernous malformations, disorders in hemostasis and thrombosis, neuropsychiatric illness, HIV and AIDS, HCV and EBV. PUBLIC HEALTH RELEVANCE: The proposal is to upgrade the current in house macromolecular X-ray crystallography system at Yale University School of Medicine. The technology of the current system is unable to achieve the necessary results to adequately support the 18 NIH-funded projects of the 8 major users and 1 minor user. NIH funding is provided by 5 different institutes (NIAID, NIDDK, NIGMS, NIMH, NCI). The proposed upgrade is essential to the NIH-funded research conducted under these grants.

Agency
National Institute of Health (NIH)
Institute
Office of The Director, National Institutes of Health (OD)
Type
Biomedical Research Support Shared Instrumentation Grants (S10)
Project #
1S10OD018007-01
Application #
8639724
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Levy, Abraham
Project Start
2014-07-01
Project End
2015-06-30
Budget Start
2014-07-01
Budget End
2015-06-30
Support Year
1
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Yale University
Department
Pharmacology
Type
Schools of Medicine
DUNS #
City
New Haven
State
CT
Country
United States
Zip Code
06510
Stiegler, Amy L; Boggon, Titus J (2018) The N-Terminal GTPase Domain of p190RhoGAP Proteins Is a PseudoGTPase. Structure 26:1451-1461.e4
Pantouris, Georgios; Bucala, Richard; Lolis, Elias J (2018) Structural Plasticity in the C-Terminal Region of Macrophage Migration Inhibitory Factor-2 Is Associated with an Induced Fit Mechanism for a Selective Inhibitor. Biochemistry 57:3599-3605
Pantouris, Georgios; Ho, Junming; Shah, Dilip et al. (2018) Nanosecond Dynamics Regulate the MIF-Induced Activity of CD74. Angew Chem Int Ed Engl 57:7116-7119
Ha, Byung Hak; Boggon, Titus J (2018) CDC42 binds PAK4 via an extended GTPase-effector interface. Proc Natl Acad Sci U S A 115:531-536
Zhang, Eric Y; Ha, Byung Hak; Boggon, Titus J (2018) PAK4 crystal structures suggest unusual kinase conformational movements. Biochim Biophys Acta Proteins Proteom 1866:356-365
Reshetnyak, Andrey V; Mohanty, Jyotidarsini; Tomé, Francisco et al. (2018) Identification of a biologically active fragment of ALK and LTK-Ligand 2 (augmentor-?). Proc Natl Acad Sci U S A 115:8340-8345
Ha, Byung Hak; Boggon, Titus J (2018) The crystal structure of pseudokinase PEAK1 (Sugen kinase 269) reveals an unusual catalytic cleft and a novel mode of kinase fold dimerization. J Biol Chem 293:1642-1650
Chan, Albert H; Lee, Won-Gil; Spasov, Krasimir A et al. (2017) Covalent inhibitors for eradication of drug-resistant HIV-1 reverse transcriptase: From design to protein crystallography. Proc Natl Acad Sci U S A 114:9725-9730
Gao, Xiang; Deng, Lingquan; Stack, Gabrielle et al. (2017) Evolution of host adaptation in the Salmonella typhoid toxin. Nat Microbiol 2:1592-1599
Puleo, David E; Kucera, Kaury; Hammarén, Henrik M et al. (2017) Identification and Characterization of JAK2 Pseudokinase Domain Small Molecule Binders. ACS Med Chem Lett 8:618-621

Showing the most recent 10 out of 12 publications