We request funds to purchase and install an NMR spectrometer system for highly sensitive direct detection of signals from carbon-13 and nitrogen-15 in proteins, nucleic acids, metabolites, and natural products. The system will have multinuclear (hydrogen-1, hydrogen-2, carbon-13, and nitrogen-15) capability. To save money, this system will re-use an Oxford 500 MHz (1H) magnet available in house. Direct observation of carbon-13 and nitrogen-15 has proven to be the only way to detect NMR signals from the active sites of paramagnetic metal containing proteins. In addition, direct observation of carbon-13 has shown great promise as a strategy for collecting and assigning NMR spectral data from larger proteins and nucleic acids. The user projects described cover structure-function investigations of proteins, protein-protein complexes, protein-ligand complexes, nucleic acids, protein-nucleic acid complexes, and natural products. The systems to be studied are large, complex, and in several cases contain paramagnetic centers. These properties preclude or hinder their investigation by standard proton-detected multinuclear approaches. We provide examples that demonstrate the necessity of the direct detection approach. Compared to currently available instrumentation, the requested system will increase the sensitivity of direct carbon-13 and nitrogen-15 detection experiments by a factor of 3-4 and thus decrease data collection time by a factor of 10. The system will enable the investigation of systems that are larger, less-soluble, and less-stable than can be currently considered. The instrumentation will be installed in the National Magnetic Resonance Facility at Madison (NMRFAM) in space already fitted out and optimized for tight control of temperature and humidity and with conditioned power and a captive chilled-water system. The instrumentation will be managed by spectroscopists experienced in the operation and maintenance of NMR systems with cryogenic probes, who will provide training in the use of the instrumentation and work with users to develop optimal data collection approaches specific to their problems. Access will be allocated according to published NMRFAM operating procedures, and oversight will be provided by NMRFAM's standing local and external advisory boards. Direct-detection experiments offer one the most exciting new approaches to structure-function investigations of proteins and nucleic acids. Among the systems described are ones of direct relevance to human disease: iron-sulfur assembly (Friedreich's ataxia), fatty acid desaturation (obesity, diabetes), and RNA-metal interactions (ageing, cancer). ? ? ?

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biomedical Research Support Shared Instrumentation Grants (S10)
Project #
1S10RR023438-01A1
Application #
7389073
Study Section
Special Emphasis Panel (ZRG1-BCMB-R (30))
Program Officer
Tingle, Marjorie
Project Start
2008-02-01
Project End
2010-01-31
Budget Start
2008-02-01
Budget End
2010-01-31
Support Year
1
Fiscal Year
2008
Total Cost
$500,000
Indirect Cost
Name
University of Wisconsin Madison
Department
Biochemistry
Type
Schools of Earth Sciences/Natur
DUNS #
161202122
City
Madison
State
WI
Country
United States
Zip Code
53715
Cai, Kai; Frederick, Ronnie O; Dashti, Hesam et al. (2018) Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. Structure 26:1127-1136.e4
Travers, Timothy; López, Cesar A; Van, Que N et al. (2018) Molecular recognition of RAS/RAF complex at the membrane: Role of RAF cysteine-rich domain. Sci Rep 8:8461
Thomas, Nathan E; Wu, Chao; Morrison, Emma A et al. (2018) The C terminus of the bacterial multidrug transporter EmrE couples drug binding to proton release. J Biol Chem 293:19137-19147
Wijayatunga, Nadeeja N; Sams, Valerie G; Dawson, John A et al. (2018) Roux-en-Y gastric bypass surgery alters serum metabolites and fatty acids in patients with morbid obesity. Diabetes Metab Res Rev 34:e3045
Assadi-Porter, Fariba M; Reiland, Hannah; Sabatini, Martina et al. (2018) Metabolic Reprogramming by 3-Iodothyronamine (T1AM): A New Perspective to Reverse Obesity through Co-Regulation of Sirtuin 4 and 6 Expression. Int J Mol Sci 19:
Dominguez, Eddie; Zarnowski, Robert; Sanchez, Hiram et al. (2018) Conservation and Divergence in the Candida Species Biofilm Matrix Mannan-Glucan Complex Structure, Function, and Genetic Control. MBio 9:
Wales, Jessica A; Chen, Cheng-Yu; Breci, Linda et al. (2018) Discovery of stimulator binding to a conserved pocket in the heme domain of soluble guanylyl cyclase. J Biol Chem 293:1850-1864
Schilke, Brenda A; Ciesielski, Szymon J; Ziegelhoffer, Thomas et al. (2017) Broadening the functionality of a J-protein/Hsp70 molecular chaperone system. PLoS Genet 13:e1007084
Mong, Surin K; Cochran, Frank V; Yu, Hongtao et al. (2017) Heterochiral Knottin Protein: Folding and Solution Structure. Biochemistry 56:5720-5725
Warden, Meghan S; Tonelli, Marco; Cornilescu, Gabriel et al. (2017) Structure of RNA Stem Loop B from the Picornavirus Replication Platform. Biochemistry 56:2549-2557

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