We have designed a training program for PhD students in Bioinformatics, Genome Technology and Computational Biology. Once it became apparent that modern biology would be increasingly dependent on quantitative methods, several approaches to training arose, largely as a matter of necessity rather than planning. Some of these, characterizes as teaching experts in one field the competencies of the other, were important when the field was changing to quickly to train a new cadre of researchers in a completely new field that had not yet been crystallized. This activity remains important, but is no longer sufficient. Mathematicians operating in the traditional context of academic mathematics departments will continue to learn biology and make contributions to its development. Laboratory biologists will similarly acquire competence in the statistical and computational techniques necessary to make use of genome technologies. But we are convinced of three key things: 1) that the greatest contributions in the field will be made by a new breed of researcher trained in computational biology per se, 2) that the time to begin such a training effort has arrived, with a substantial number of very bright undergraduates proactively pursuing double majors in the mathematical and biological sciences or similar interdisciplinary education, 3) perhaps more controversial than the other two, that mathematical talent is relatively rare, and that mathematical training requires substantial effort on the parts of both student and teacher. Thus, our program builds upon a solid foundation in statistics, and computer science, while providing direct integration into experimental biology laboratories, clinical research programs, and the culture of the life sciences.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Institutional National Research Service Award (T32)
Project #
5T32GM071340-05
Application #
7649534
Study Section
National Institute of General Medical Sciences Initial Review Group (BRT)
Program Officer
Remington, Karin A
Project Start
2005-07-01
Project End
2010-06-30
Budget Start
2009-07-01
Budget End
2010-06-30
Support Year
5
Fiscal Year
2009
Total Cost
$174,252
Indirect Cost
Name
Duke University
Department
Biostatistics & Other Math Sci
Type
Schools of Medicine
DUNS #
044387793
City
Durham
State
NC
Country
United States
Zip Code
27705
McDowell, Ian C; Barrera, Alejandro; D'Ippolito, Anthony M et al. (2018) Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding. Genome Res 28:1272-1284
McDowell, Ian C; Manandhar, Dinesh; Vockley, Christopher M et al. (2018) Clustering gene expression time series data using an infinite Gaussian process mixture model. PLoS Comput Biol 14:e1005896
Reese, Aspen T; Cho, Eugenia H; Klitzman, Bruce et al. (2018) Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut. Elife 7:
Ojewole, Adegoke A; Jou, Jonathan D; Fowler, Vance G et al. (2018) BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces. J Comput Biol 25:726-739
Midani, Firas S; Weil, Ana A; Chowdhury, Fahima et al. (2018) Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection. J Infect Dis 218:645-653
Leete, Jessica; Gurley, Susan; Layton, Anita (2018) Modeling Sex Differences in the Renin Angiotensin System and the Efficacy of Antihypertensive Therapies. Comput Chem Eng 112:253-264
Hivert, Marie-France; Scholtens, Denise M; Allard, Catherine et al. (2017) Genetic determinants of adiponectin regulation revealed by pregnancy. Obesity (Silver Spring) 25:935-944
Washburne, Alex D; Silverman, Justin D; Leff, Jonathan W et al. (2017) Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets. PeerJ 5:e2969
Midani, Firas S; Wynn, Michelle L; Schnell, Santiago (2017) The importance of accurately correcting for the natural abundance of stable isotopes. Anal Biochem 520:27-43
Reddy, Anupama; Zhang, Jenny; Davis, Nicholas S et al. (2017) Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma. Cell 171:481-494.e15

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