Epidemiologic data indicate that a major risk factor for asthma is a positive family history. However, genes that confer susceptibility to asthma are unknown. We propose to identify asthma susceptibility loci by performing two-point and complex linkage analysis with microsatellite markers distributed throughout the genome in families with well-defined asthma. Our study will focus on two distinct samples: Chicago inner-city and suburban families ascertained through the pediatric and adult asthma clinics at the University of Chicago and members of the Hutterite brethren, a religious isolate that lives on communal farms in South Dakota. The latter population has previously been characterized with respect to asthma and other respiratory illnesses. We propose to study 150 clinic families (average family size = 10) and eight multigenerational Hutterite families. Families will be selected through asthmatic probands who have at least one first degree relative with asthma. The diagnosis of asthma in affected and unaffected subjects will be made using strict criteria based on medical history and results of spirometry and methacholine challenge studies. Skin tests for commonly inhaled antigens will be performed, and IgE levels and eosinophil counts will be measured on all subjects. All family members will be genotype for up to 300 polymorphic DNA markers (microsatellite markers) that map near """"""""candidate susceptibility loci"""""""" or are distributed randomly throughout the genome. Permanent lines will be established or cells derived from all subjects. Preliminary screening of genetic data will be performed using two-point linkage analysis, considering two genetic models that include a disease prevalence of 10 and assume heterogeneity but vary with respect to penetrance and the proportional contribution of the susceptibility locus (20% vs. 40%). A two-point lod score greater than 2.0 under any genetic model will be subjected to further investigation using nonparametric tests, multipoint linkage analysis, and more sophisticated genetic models that incorporate additional genetic and environmental covariates. If linkage to a susceptibility locus is found, attempts will be make to identify and clone the susceptibility locus. Once susceptibility alleles are known, preventive measures can focus on individuals at-risk for developing asthma. Identifying asthma susceptibility alleles would also contribute toward elucidating the primary defect in asthma and advance the development of improved treatments.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Research Project--Cooperative Agreements (U01)
Project #
5U01HL049596-03
Application #
2225690
Study Section
Special Emphasis Panel (ZHL1-CCT-P (S1))
Project Start
1992-09-30
Project End
1997-08-31
Budget Start
1994-09-01
Budget End
1995-08-31
Support Year
3
Fiscal Year
1994
Total Cost
Indirect Cost
Name
University of Chicago
Department
Obstetrics & Gynecology
Type
Schools of Medicine
DUNS #
225410919
City
Chicago
State
IL
Country
United States
Zip Code
60637
Johnston, Henry Richard; Hu, Yi-Juan; Gao, Jingjing et al. (2017) Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome. Sci Rep 7:46398
Kessler, Michael D; Yerges-Armstrong, Laura; Taub, Margaret A et al. (2016) Challenges and disparities in the application of personalized genomic medicine to populations with African ancestry. Nat Commun 7:12521
Mathias, Rasika Ann; Taub, Margaret A; Gignoux, Christopher R et al. (2016) A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome. Nat Commun 7:12522
Bunyavanich, Supinda; Schadt, Eric E; Himes, Blanca E et al. (2014) Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis. BMC Med Genomics 7:48
Myers, Rachel A; Himes, Blanca E; Gignoux, Christopher R et al. (2012) Further replication studies of the EVE Consortium meta-analysis identifies 2 asthma risk loci in European Americans. J Allergy Clin Immunol 130:1294-301
Torgerson, Dara G; Capurso, Daniel; Ampleford, Elizabeth J et al. (2012) Genome-wide ancestry association testing identifies a common European variant on 6q14.1 as a risk factor for asthma in African American subjects. J Allergy Clin Immunol 130:622-629.e9
Torgerson, Dara G; Capurso, Daniel; Mathias, Rasika A et al. (2012) Resequencing candidate genes implicates rare variants in asthma susceptibility. Am J Hum Genet 90:273-81
Wegmann, Daniel; Kessner, Darren E; Veeramah, Krishna R et al. (2011) Recombination rates in admixed individuals identified by ancestry-based inference. Nat Genet 43:847-53
Motika, Caroline A; Papachristou, Charalampos; Abney, Mark et al. (2011) Rising prevalence of asthma is sex-specific in a US farming population. J Allergy Clin Immunol 128:774-9
Torgerson, Dara G; Ampleford, Elizabeth J; Chiu, Grace Y et al. (2011) Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. Nat Genet 43:887-92

Showing the most recent 10 out of 46 publications