Hepatitis C virus (HCV) infection is the leading cause of liver-related morbidity and mortality in the United States. Although spontaneous clearance of virus occurs in some who are infected and current treatment regimens result in sustained virologic response in others, there remains an unacceptably high frequency of treatment failure. To better understand the contribution of the immune response to viral clearance, we propose the creation of a Bay Area Hepatitis C Cooperative Research Center. The goals of this Center are to define the biology of the innate and adaptive immune responses to HCV in the setting of chronic infection, to understand how these responses are modulated by treatment, and to discern which parameters of the immune response are associated with (and possibly predictive of) an effective antiviral response to therapy. The Center will assemble a strong multidisciplinary team comprised of immunologists and clinical investigators at multiple sites in the San Francisco Bay Area, including three different sites associated with the University of California at San Francisco (UCSF) (San Francisco General Hospital, UC Medical Center, and the San Francisco Veterans Affairs Medical Center) as well as with the California Pacific Medical Center, the Blood Systems Research Institute, and Kaiser Permanente (KP) of Northern California. A Clinical Epidemiology Core (led by Drs. Michele Manos of KP Division of Research and Norah Terrault of UCSF) will develop and manage (a) a retrospective case-control cohort of 200 subjects who did or did not respond to standard-of-care therapy, and (b) a prospective cohort of treatment-naive subjects who will be followed before and after the initiation of therapy. In Project 1 (led by Drs. James Ryan and Lewis Lanier of UCSF), the contribution of innate immunity to treatment response will be studied. Concomitantly, and using the same set of patient samples. Project 2 (led by Drs. Dennis Hartigan- O'Connor and Joseph McCune of UCSF) will analyze the role of adaptive T and B cell responses against HCV. Coordinated analyses of data obtained in both Projects will permit tests of discrete hypotheses that speak to interactions between the innate and adaptive systems. The activities of the Center will be organized through an Administrative Core, directed by the PI (Dr. McCune). We anticipate that the efforts of this Center will provide data that can inform treatment decisions in the short term and contribute to development of better and more generally applicable therapies for chronic HCV disease in the longer term.

Public Health Relevance

The Center described in this grant proposal will mobilize a number of existing centers and teams of clinical and research excellence to study diverse patient cohorts in a comprehensive, multidisciplinary fashion. We anticipate that these insights will help to prioritize and to focus the application of novel therapies that are moving towards the clinic for the treatment of chronic HCV disease. We imagine, also, that information gained by the Center might be pertinent to our approach towards other chronic viral diseases.

National Institute of Health (NIH)
National Institute of Allergy and Infectious Diseases (NIAID)
Research Program--Cooperative Agreements (U19)
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Special Emphasis Panel (ZAI1-BP-M (J1))
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Koshy, Rajen
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University of California San Francisco
Internal Medicine/Medicine
Schools of Medicine
San Francisco
United States
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Méndez-Lagares, Gema; Lu, Ding; Chen, Connie et al. (2018) Memory T Cell Proliferation before Hepatitis C Virus Therapy Predicts Antiviral Immune Responses and Treatment Success. J Immunol 200:1124-1132
Dai, Ke-Zheng; Ryan, James C; Naper, Christian et al. (2018) Identification of MHC Class Ib Ligands for Stimulatory and Inhibitory Ly49 Receptors and Induction of Potent NK Cell Alloresponses in Rats. J Immunol 200:2847-2859
Price, Jennifer C; Murphy, Rosemary C; Shvachko, Valentina A et al. (2014) Effectiveness of telaprevir and boceprevir triple therapy for patients with hepatitis C virus infection in a large integrated care setting. Dig Dis Sci 59:3043-52
Nabekura, Tsukasa; Kanaya, Minoru; Shibuya, Akira et al. (2014) Costimulatory molecule DNAM-1 is essential for optimal differentiation of memory natural killer cells during mouse cytomegalovirus infection. Immunity 40:225-34
Hartigan-O'Connor, Dennis J; Lin, Din; Ryan, James C et al. (2014) Monocyte activation by interferon ? is associated with failure to achieve a sustained virologic response after treatment for hepatitis C virus infection. J Infect Dis 209:1602-12
Manos, M Michele; Ho, Chanda K; Murphy, Rosemary C et al. (2013) Physical, social, and psychological consequences of treatment for hepatitis C : a community-based evaluation of patient-reported outcomes. Patient 6:23-34
Cozen, Myrna L; Ryan, James C; Shen, Hui et al. (2013) Nonresponse to interferon-? based treatment for chronic hepatitis C infection is associated with increased hazard of cirrhosis. PLoS One 8:e61568