We propose to assemble a technology development and structure determination pipeline for high throughput structural biology. Our emphasis will be on sample preparation for diffraction study. Our technology development efforts will center on (1) the expression and purification of small protein - protein complexes from yeast; (2) the expression and purification of transmembrane proteins from yeast; (3) the identification, expression and purification of antibodies that target transmembrane proteins from yeast, as aids to their crystallization; (4) the crystallization of protein complexes, transmembrane proteins, transmembrane protein - antibody complexes, and soluble proteins; and (5) the cryopreservation of protein crystals. All of the technology development efforts will be at, or eventually geared to, high throughput. Our structure determination pipeline will run at medium throughput, and will take projects emanating from the technology development pipeline through to structure solution, analysis and deposition. ? ? In addition we propose to serve as a structural biology research resource for the greater biological community, forming a partnership with biologists and structural biologists that will make the high throughput crystallization and cryopreservation pipeline available as a community resource. We currently serve the needs of more than 300 structural biologists who provide proteins for high throughput screening of chemical conditions that foster crystallization. We will extend that pipeline to include optimization and growth of frozen, mounted, diffraction-quality crystals ready for structural analysis. Access to the pipeline will rapidly extend the benefits of the technology development to a larger biological community. ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center--Cooperative Agreements (U54)
Project #
5U54GM074899-02
Application #
7090132
Study Section
Special Emphasis Panel (ZGM1-CBB-3 (SC))
Program Officer
Basavappa, Ravi
Project Start
2005-07-01
Project End
2010-06-30
Budget Start
2006-07-01
Budget End
2007-06-30
Support Year
2
Fiscal Year
2006
Total Cost
$3,117,965
Indirect Cost
Name
Hauptman-Woodward Medical Research Institute
Department
Type
DUNS #
074025479
City
Buffalo
State
NY
Country
United States
Zip Code
14203
Sridharan, Rajashri; Zuber, Jeffrey; Connelly, Sara M et al. (2014) Fluorescent approaches for understanding interactions of ligands with G protein coupled receptors. Biochim Biophys Acta 1838:15-33
Grant, Thomas D; Snell, Edward H; Luft, Joseph R et al. (2012) Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase. Nucleic Acids Res 40:3723-31
Luft, Joseph R; Snell, Edward H; Detitta, George T (2011) Lessons from high-throughput protein crystallization screening: 10 years of practical experience. Expert Opin Drug Discov 6:465-80
Luft, Joseph R; Wolfley, Jennifer R; Snell, Edward H (2011) What's in a drop? Correlating observations and outcomes to guide macromolecular crystallization experiments. Cryst Growth Des 11:651-663
Luthra, Amit; Zhu, Guangyu; Desrosiers, Daniel C et al. (2011) The transition from closed to open conformation of Treponema pallidum outer membrane-associated lipoprotein TP0453 involves membrane sensing and integration by two amphipathic helices. J Biol Chem 286:41656-68
Grant, Thomas D; Luft, Joseph R; Wolfley, Jennifer R et al. (2011) Small angle X-ray scattering as a complementary tool for high-throughput structural studies. Biopolymers 95:517-30
Clark, Kathleen M; Fedoriw, Nadia; Robinson, Katrina et al. (2010) Purification of transmembrane proteins from Saccharomyces cerevisiae for X-ray crystallography. Protein Expr Purif 71:207-23
Larson, Steven B; Day, John S; Nguyen, Chieugiang et al. (2010) Structure of bovine pancreatic ribonuclease complexed with uridine 5'-monophosphate at 1.60 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun 66:113-20
Luft, Joseph R; Furlani, Nicholas M; Nemoyer, Rachel E et al. (2010) Crystal cookery - using high-throughput technologies and the grocery store as a teaching tool. J Appl Crystallogr 43:1189-1207
Cumbaa, Christian A; Jurisica, Igor (2010) Protein crystallization analysis on the World Community Grid. J Struct Funct Genomics 11:61-9

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