The Proteomics, Bioanalysis and Bioinformatics Core is located in downtown Buffalo within the New York State Center of Excellence in Bioinformatics & Life Sciences (CEBLS) (www.bioinformatics.buffalo.edu/). which is a free-standing facility integral to the University at Buffalo/SUNY and the Buffalo-Niagara Medical Center. Key functional capabilities of this Module are: a) small molecule analysis (drugs, metabolites and endogenous compounds); b) proteomic analysis of tissues from both normal and pathological specimens; and c) bioinformatics applications for creation, management and correlative analysis of large data sets, such as those derived from proteomics analyses, as well as other in silico applications. The kinds of instrumentation and range of capabilities included in this Core facility are state-of-the-art (the State of New York and other entities have invested more than $15 million into the facility and its instrumentation so far), and are not readily available at the other SUNY campuses. Accessibility to this Core will be afforded to support the ongoing and newly emerging research programs covered in this proposal, which requires the kinds of methodologies and analytical capabilities offered by this core. This core will also facilitate ongoing and new collaborations between investigators who are developing novel therapeutic efforts for Retinopathy of Prematurity.

Agency
National Institute of Health (NIH)
Institute
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD)
Type
Specialized Center--Cooperative Agreements (U54)
Project #
5U54HD071594-05
Application #
8883641
Study Section
Special Emphasis Panel (ZHD1)
Project Start
Project End
2017-06-30
Budget Start
2015-07-01
Budget End
2016-06-30
Support Year
5
Fiscal Year
2015
Total Cost
Indirect Cost
Name
Suny Downstate Medical Center
Department
Type
DUNS #
040796328
City
Brooklyn
State
NY
Country
United States
Zip Code
11203
Beharry, Kay D; Cai, Charles L; Skelton, Jacqueline et al. (2018) Oxygen-Induced Retinopathy from Recurrent Intermittent Hypoxia Is Not Dependent on Resolution with Room Air or Oxygen, in Neonatal Rats. Int J Mol Sci 19:
Beharry, Kay D; Cai, Charles L; Ahmad, Taimur et al. (2018) Impact of Chronic Neonatal Intermittent Hypoxia on Severity of Retinal Damage in a Rat Model of Oxygen-Induced Retinopathy. J Nat Sci 4:
Nicolau, Yona; Bany-Mohammed, Fayez; Cai, Charles L et al. (2018) SiRNA silencing of VEGF, IGFs, and their receptors in human retinal microvascular endothelial cells. Am J Transl Res 10:1990-2003
Cai, Charles; Ahmad, Taimur; Valencia, Gloria B et al. (2018) Intermittent hypoxia suppression of growth hormone and insulin-like growth factor-I in the neonatal rat liver. Growth Horm IGF Res 41:54-63
Valencia, Arwin M; Abrantes, Maria A; Hasan, Jamal et al. (2018) Reactive Oxygen Species, Biomarkers of Microvascular Maturation and Alveolarization, and Antioxidants in Oxidative Lung Injury. React Oxyg Species (Apex) 6:373-388
Beharry, Kay D; Cai, Charles L; Valencia, Gloria B et al. (2018) Human retinal endothelial cells and astrocytes cultured on 3-D scaffolds for ocular drug discovery and development. Prostaglandins Other Lipid Mediat 134:93-107
Wang, Xue; Niu, Jin; Li, Jun et al. (2018) Temporal Effects of Combined Birinapant and Paclitaxel on Pancreatic Cancer Cells Investigated via Large-Scale, Ion-Current-Based Quantitative Proteomics (IonStar). Mol Cell Proteomics 17:655-671
Quan, Michelle; Cai, Charles L; Valencia, Gloria B et al. (2017) MnTBAP or Catalase Is More Protective against Oxidative Stress in Human Retinal Endothelial Cells Exposed to Intermittent Hypoxia than Their Co-Administration (EUK-134). React Oxyg Species (Apex) 3:47-65
Shen, Xiaomeng; Shen, Shichen; Li, Jun et al. (2017) An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts. J Proteome Res 16:2445-2456
Valencia, Arwin M; Cai, Charles L; Tan, Jeffrey et al. (2017) Intravitreal bevacizumab alters type IV collagenases and exacerbates arrested alveologenesis in the neonatal rat lungs. Exp Lung Res 43:120-133

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