Core 6

Musen, Mark A.

Abstract

The NCBO encompasses numerous activities, projects, and sites. Our Center allocates substantial resources to scholarly and technical research and development as well as to collaborative Driving Biological Projects (DBPs), training, and dissemination activities. Consequently, the NCBO requires a comprehensive management structure that efficiently copes with complex administrative task of running a unified and interactive center.

Funding Agency

• Agency: National Institute of Health (NIH)
• Institute: National Human Genome Research Institute (NHGRI)
• Type: Specialized Center--Cooperative Agreements (U54)
• Project #: 5U54HG004028-07
• Application #: 8330926
• Study Section: Special Emphasis Panel (ZRG1)
• Budget Start: 2011-08-01
• Budget End: 2012-07-31
• Support Year: 7
• Fiscal Year: 2011
• Total Cost: $391,764

Institution

• Name: Stanford University
• DUNS #: 009214214
• City: Stanford
• State: CA
• Country: United States
• Zip Code: 94305

Publications

Kamdar, Maulik R; Walk, Simon; Tudorache, Tania et al. (2018) Analyzing user interactions with biomedical ontologies: A visual perspective. Web Semant 49:16-30

van der Weyden, Louise; Arends, Mark J; Campbell, Andrew D et al. (2017) Genome-wide in vivo screen identifies novel host regulators of metastatic colonization. Nature 541:233-236

Kamdar, Maulik R; Musen, Mark A (2017) Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud. AMIA Annu Symp Proc 2017:1014-1023

Kamdar, Maulik R; Walk, Simon; Tudorache, Tania et al. (2017) BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. Semant Web ISWC 10588:130-138

Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D et al. (2017) Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. AMIA Annu Symp Proc 2017:1272-1281

Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J et al. (2017) NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. J Biomed Semantics 8:21

Kamdar, Maulik R; Musen, Mark A (2017) PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data. Proc Int World Wide Web Conf 2017:321-329

van der Weyden, Louise; Karp, Natasha A; Swiatkowska, Agnieszka et al. (2017) Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation. Sci Data 4:170129

Ochs, Christopher; Perl, Yehoshua; Geller, James et al. (2017) An empirical analysis of ontology reuse in BioPortal. J Biomed Inform 71:165-177

Nead, Kevin T; Gaskin, Greg; Chester, Cariad et al. (2016) Androgen Deprivation Therapy and Future Alzheimer's Disease Risk. J Clin Oncol 34:566-71