We study how enhancers activate transcription in the chromatin environment of eukaryotic cells. To study the interaction of globin genes and elements of the beta-globin locus control region (LCR), we have used chromatinized, stably replicating episomes in human erythroid K562 cells. Double label FISH confirms the maintenance of 10-15 episomes per cell. The episomes, as expected, associate with the cellular chromosomes, providing a means to achieve equivalent segregation at cell division. Mutagenesis studies which systematically eliminated transcription factor binding sites in LCR HS2 and in the embryonic epsilon-globin promoter in minichromosomes, revealed that enhancer and promoter mutually affect each others chromatin structure. Studies with the beta-globin gene, and with LCR HS3 and HS4 provide additional support for this concept. These data are most consistent with a direct communication model of enhancer action. To further understand enhancer dependent promoter remodeling, we examined promoter remodeling and histone acetylation at transcriptionally active and inactive promoters. ChIPs assays revealed dramatic hyperacetylation of histone H3 and H4 specifically at the promoter proximal nucleosome in active promoters, while the adjacent upstream nucleosome was not differentially acetylated. Both promoter remodeling and histone hyperacetylation were dependent on the HS2 enhancer, and, interestingly, on the TATA box in the promoter. We continue to explore the order of events underlying gene activation by a distant enhancer and the regulatory role in vivo of chromatin structure in the expression of globin genes.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Intramural Research (Z01)
Project #
1Z01DK015508-13
Application #
6508977
Study Section
(LCDB)
Project Start
Project End
Budget Start
Budget End
Support Year
13
Fiscal Year
2001
Total Cost
Indirect Cost
Name
U.S. National Inst Diabetes/Digst/Kidney
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Lee, Jongjoo; Krivega, Ivan; Dale, Ryan K et al. (2017) The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions. Cell Rep 19:2490-2502
Krivega, Ivan; Dean, Ann (2016) Chromatin looping as a target for altering erythroid gene expression. Ann N Y Acad Sci 1368:31-9
Deng, Wulan; Rupon, Jeremy W; Krivega, Ivan et al. (2014) Reactivation of developmentally silenced globin genes by forced chromatin looping. Cell 158:849-860
Song, Sang-Hyun; Hou, Chunhui; Dean, Ann (2007) A positive role for NLI/Ldb1 in long-range beta-globin locus control region function. Mol Cell 28:810-22
Zhao, Hui; Kim, Aeri; Song, Sang-Hyun et al. (2006) Enhancer blocking by chicken beta-globin 5'-HS4: role of enhancer strength and insulator nucleosome depletion. J Biol Chem 281:30573-80
Dean, Ann (2006) On a chromosome far, far away: LCRs and gene expression. Trends Genet 22:38-45
Zhao, Hui; Dean, Ann (2005) Organizing the genome: enhancers and insulators. Biochem Cell Biol 83:516-24
Dean, Ann (2004) Chromatin remodelling and the interaction between enhancers and promoters in the beta-globin locus. Brief Funct Genomic Proteomic 2:344-54
Kim, AeRi; Dean, Ann (2004) Developmental stage differences in chromatin subdomains of the beta-globin locus. Proc Natl Acad Sci U S A 101:7028-33
Zhao, Hui; Dean, Ann (2004) An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene. Nucleic Acids Res 32:4903-19

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