A new NMR approach has been developed for the measurement of three-bond J couplings. The approach is applicable to isotopically enriched macromolecules and to concentrated solutions of molecules at natural abundance. The three-bond J couplings between atomic nuclei provide very direct information on the magnitude of the intervening dihedral angles and thereby yield valuable new constraints in the structure determination process of biological macromolecules. The approach has been successfully applied to the measurement of 13C-13C, 13C-15N, 1H-15N, 1H-13C, 1H-113Cd, and HN-Ha J couplings in a range of proteins. It has been demonstrated for the first time that a detailed structural analysis of a detergent-solubilized protein is possible without recourse to perdeuterated detergent. This type of analysis relies on the combined use of 13C- and 15N-edited NMR experiments and pulsed field gradients which make it possible to suppress the intense detergent 1H NMR signals while observing the much weaker protein signals. The approach is demonstrated for the protein calcineurin B, solubilized by a 15 molar excess of the detergent CHAPS. The calcineurin A/B complex remains fully active in the presence of CHAPS and NMR results confirm that the detergent does not significantly alter the protein structure. Resonance assignment of the backbone 1H,13C, and 15N resonances and the secondary structure determination process have been completed. It is evident that the secondary structure of calcineurin B is highly homologous with that of the smaller protein calmodulin.

Project Start
Project End
Budget Start
Budget End
Support Year
9
Fiscal Year
1993
Total Cost
Indirect Cost
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Country
United States
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Lee, Jung Ho; Ying, Jinfa; Bax, Ad (2016) Quantitative evaluation of positive ? angle propensity in flexible regions of proteins from three-bond J couplings. Phys Chem Chem Phys 18:5759-70
Vogeli, Beat; Yao, Lishan; Bax, Ad (2008) Protein backbone motions viewed by intraresidue and sequential HN-Halpha residual dipolar couplings. J Biomol NMR 41:17-28
Chill, Jordan H; Louis, John M; Delaglio, Frank et al. (2007) Local and global structure of the monomeric subunit of the potassium channel KcsA probed by NMR. Biochim Biophys Acta 1768:3260-70
Ying, Jinfa; Chill, Jordan H; Louis, John M et al. (2007) Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR. J Biomol NMR 37:195-204
Grishaev, Alexander; Ying, Jinfa; Bax, Ad (2006) Pseudo-CSA restraints for NMR refinement of nucleic acid structure. J Am Chem Soc 128:10010-1
Ying, Jinfa; Grishaev, Alexander; Bryce, David L et al. (2006) Chemical shift tensors of protonated base carbons in helical RNA and DNA from NMR relaxation and liquid crystal measurements. J Am Chem Soc 128:11443-54
Ying, Jinfa; Bax, Ad (2006) 2'-hydroxyl proton positions in helical RNA from simultaneously measured heteronuclear scalar couplings and NOEs. J Am Chem Soc 128:8372-3
Chill, Jordan H; Louis, John M; Miller, Christopher et al. (2006) NMR study of the tetrameric KcsA potassium channel in detergent micelles. Protein Sci 15:684-98
Ying, Jinfa; Grishaev, Alexander; Bax, Ad (2006) Carbon-13 chemical shift anisotropy in DNA bases from field dependence of solution NMR relaxation rates. Magn Reson Chem 44:302-10
Dam, Julie; Baber, James; Grishaev, Alexander et al. (2006) Variable dimerization of the Ly49A natural killer cell receptor results in differential engagement of its MHC class I ligand. J Mol Biol 362:102-13

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