We have shown that a dilute, nematic liquid crystalline phase of large, disc-shaped phospholipid particles (bicelles) can beused to induce a tunable, very weak degree of macromolecular alignment with themagnetic field. Typically, bicelle concentrations of 5% (v/v) are sufficient toinduce a degree of protein or nucleic acid ordering on the order of 10^-3, whichmeans that alldipolar couplings are scaled down by this factor relative to astatic molecule. At this level of alignment, the magnetic dipole-dipoleinteractions between nearby pairs of atoms are sufficiently large that they are easilyand accurately measured, but small enough that the spectral simplicity of theisotropic, high resolution NMR spectrum is retained. Although the macroscopicviscosity of the liquid crystalline phase is more than an order of magnitude higherthan that of pure water, we have shown experimentally that rotational diffusionof a protein isnot significantly affected by the presence of bicelles. Use of adilute liquidcrystalline phase now makes it possible to determine theorientations of individual bond vectors in a protein all relative to a single axissystem, that of themolecular alignment tensor. This means that all observeddipole-dipole interactions define bond orientations relative to a single axis system,and not relative to spatially adjacent nuclei which until now has been the sourceof information on which structure determination by NMR was based. Inclusion ofsuch dipolar coupling information makes the structure determination far morereliable, and also provides a convenient and objective manner for evaluating thequality of a macromolecular structure determined either by NMR or by X-raycrystallography.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Intramural Research (Z01)
Project #
1Z01DK029020-14
Application #
6105204
Study Section
Special Emphasis Panel (LCP)
Project Start
Project End
Budget Start
Budget End
Support Year
14
Fiscal Year
1998
Total Cost
Indirect Cost
City
State
Country
United States
Zip Code
Lee, Jung Ho; Ying, Jinfa; Bax, Ad (2016) Quantitative evaluation of positive ? angle propensity in flexible regions of proteins from three-bond J couplings. Phys Chem Chem Phys 18:5759-70
Vogeli, Beat; Yao, Lishan; Bax, Ad (2008) Protein backbone motions viewed by intraresidue and sequential HN-Halpha residual dipolar couplings. J Biomol NMR 41:17-28
Chill, Jordan H; Louis, John M; Delaglio, Frank et al. (2007) Local and global structure of the monomeric subunit of the potassium channel KcsA probed by NMR. Biochim Biophys Acta 1768:3260-70
Ying, Jinfa; Chill, Jordan H; Louis, John M et al. (2007) Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR. J Biomol NMR 37:195-204
Grishaev, Alexander; Ying, Jinfa; Bax, Ad (2006) Pseudo-CSA restraints for NMR refinement of nucleic acid structure. J Am Chem Soc 128:10010-1
Ying, Jinfa; Grishaev, Alexander; Bryce, David L et al. (2006) Chemical shift tensors of protonated base carbons in helical RNA and DNA from NMR relaxation and liquid crystal measurements. J Am Chem Soc 128:11443-54
Ying, Jinfa; Bax, Ad (2006) 2'-hydroxyl proton positions in helical RNA from simultaneously measured heteronuclear scalar couplings and NOEs. J Am Chem Soc 128:8372-3
Chill, Jordan H; Louis, John M; Miller, Christopher et al. (2006) NMR study of the tetrameric KcsA potassium channel in detergent micelles. Protein Sci 15:684-98
Ying, Jinfa; Grishaev, Alexander; Bax, Ad (2006) Carbon-13 chemical shift anisotropy in DNA bases from field dependence of solution NMR relaxation rates. Magn Reson Chem 44:302-10
Dam, Julie; Baber, James; Grishaev, Alexander et al. (2006) Variable dimerization of the Ly49A natural killer cell receptor results in differential engagement of its MHC class I ligand. J Mol Biol 362:102-13

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