This project seeks to develop new statistical tools in evaluating gene- environment interactions and genetic susceptibility. Work has proceeded in the area of improving study designs.Geneticists have proposed using cases and their parents (case-parent triads) to study genetic effects on disease risk while overcoming the problem of population stratification or admixture. If a population consists of a number of distinct subpopulations that differ in baseline disease rates and in the frequency of a genetic variant, case-control studies may find associations between the variant and disease that arise simply because of the differing characteristics of the subpopulations and, consequently, lack etiologic import. Case-parent triad designs can eliminate such potentially misleading associations. We have investigated ways to analyze case-parent data for studying gene- environment interaction and found that a commonly used approach is invalid. We have proposed an approach based on loglinear models that provides valid inference when the usual approach fails. We are also investigating designs that augment case-parent triads with control- parent triads. Such designs should more fully extend protection against population structure to studies of genotype and exposure together. - genetic susceptibility, gene-environment interactions, case-control studies, logistic regression, loglinear models, statistical models

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES045002-04
Application #
6289958
Study Section
Special Emphasis Panel (BB)
Project Start
Project End
Budget Start
Budget End
Support Year
4
Fiscal Year
1999
Total Cost
Indirect Cost
City
State
Country
United States
Zip Code
Shi, Min; Umbach, David M; Weinberg, Clarice R (2015) Using parental phenotypes in case-parent studies. Front Genet 6:221
Shi, Min; Umbach, David M; Weinberg, Clarice R (2014) Disentangling pooled triad genotypes for association studies. Ann Hum Genet 78:345-56
Weinberg, Clarice R; Shi, Min; DeRoo, Lisa A et al. (2014) Asymmetry in family history implicates nonstandard genetic mechanisms: application to the genetics of breast cancer. PLoS Genet 10:e1004174
Kim, Jinsil; Stirling, Kara J; Cooper, Margaret E et al. (2013) Sequence variants in oxytocin pathway genes and preterm birth: a candidate gene association study. BMC Med Genet 14:77
Shi, Min; Umbach, David M; Weinberg, Clarice R (2013) Case-sibling studies that acknowledge unstudied parents and permit the inclusion of unmatched individuals. Int J Epidemiol 42:298-307
Shi, Min; Weinberg, Clarice R (2011) How much are we missing in SNP-by-SNP analyses of genome-wide association studies? Epidemiology 22:845-7
Weinberg, Clarice R; Shi, Min; Umbach, David M (2011) A sibling-augmented case-only approach for assessing multiplicative gene-environment interactions. Am J Epidemiol 174:1183-9
Shi, Min; Umbach, David M; Weinberg, Clarice R (2011) Family-based gene-by-environment interaction studies: revelations and remedies. Epidemiology 22:400-7
Yim, Hyeon Woo; Slebos, Robbert J C; Randell, Scott H et al. (2007) Smoking is associated with increased telomerase activity in short-term cultures of human bronchial epithelial cells. Cancer Lett 246:24-33
Terry, Paul D; Umbach, David M; Taylor, Jack A (2006) APE1 genotype and risk of bladder cancer: evidence for effect modification by smoking. Int J Cancer 118:3170-3

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