This area of my research tests the hypothesis that environmental exposures produce patterns of DNA damage. Such patterns can be used both to identify target genes and to suggest mutational mechanisms by which an environmental agent causes cancer. If specific carcinogens produce characteristic patterns of gene mutation in tumors, the detection of those patterns would be a powerful tool in studies of environmental risk and for use in prevention, early diagnosis, and prognosis. We are exploring this concept in our ongoing molecular epidemiologic and clinical studies designed to look at DNA damage in small biopsies of preneoplastic and normal tissue from target tissues and in normal lymphocytes. A long term goal is to develop a quantitative measure of the level of DNA mutation in normal tissue or """"""""somatic mutational load"""""""". Such a metric could provide a tissue specific measure of lifetime environmental exposure, integrated across diet, genetic susceptibility, and repair, and might offer a more precise estimate of risk for cancer, neurologic, reproductive, and other diseases where DNA damage plays a role. Fluorescence Bronchoscopy and Molecular Characterization of Abnormal Bronchial Lesions (LIFE Study): This ongoing molecular clinical study at UNC Hospitals GCRC is designed to test the hypothesis that exposure correlates with the pattern of mutation in premalignant and normal lung tissues and that such mutations may have prognostic significance for lung cancer development. We are using the Lung Imaging Fluorescent Endoscope (LIFE), a sensitive bronchoscopy technique to collect normal, premalignant, and neoplastic tissue samples from patients at high risk of lung cancer from smoking, occupational exposures, or because of family history. These people are followed over a 2 year period with repeat bronchoscopies and biopsy allowing us to follow the molecular changes in individual lesions over time. In addition we have a small pilot project the VALID study, jointly funded with UNC, to obtain optimally-collected tumor and normal tissue from patients undergoing thoracotomy for lung cancer. Colon Cell DNA Damage Study: We have initiated a new pilot study at UNC Hospitals GCRC entitled: Inhibition of Fried Meat-Induced DNA Damage: A Dietary Intervention Study. The primary aim of this study is to assess genetic damage to colonic epithelium and blood lymphocytes induced by compounds in certain foods, in particular the pyrolysis products formed in cooked meat, as well as the putative protective effects of certain dietary compounds against that damage. This study will be among the few to examine the interaction of genotoxic dietary components with ?protective? components on a molecular level. It is the first use of the alkaline single cell-gel (Comet) assay in a controlled feeding study to detect DNA damage in colonic epithelial cells, rather than in target tissue surrogates like lymphocytes. In addition, this research will have implications for choosing the most appropriate intermediate outcomes that would be predictive of cancer in prospective cohort studies; it will also have implications for dietary recommendations and the methodological approach to future feeding studies of genotoxicity in humans.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES049032-08
Application #
7007396
Study Section
Epidemiology and Biometry Training Committee (EB)
Project Start
Project End
Budget Start
Budget End
Support Year
8
Fiscal Year
2004
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Xu, Zongli; Langie, Sabine A S; De Boever, Patrick et al. (2017) RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip. BMC Genomics 18:4
Xu, Zongli; Taylor, Jack A; Leung, Yuet-Kin et al. (2016) oxBS-MLE: an efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine in paired bisulfite and oxidative bisulfite treated DNA. Bioinformatics 32:3667-3669
Niu, Liang; Xu, Zongli; Taylor, Jack A (2016) RCP: a novel probe design bias correction method for Illumina Methylation BeadChip. Bioinformatics 32:2659-63
Xu, Zongli; Niu, Liang; Li, Leping et al. (2016) ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip. Nucleic Acids Res 44:e20
Kessler, David C; Taylor, Jack A; Dunson, David B (2014) Learning phenotype densities conditional on many interacting predictors. Bioinformatics 30:1562-8
Flake, Gordon P; Rivera, M Patricia; Funkhouser, William K et al. (2007) Detection of pre-invasive lung cancer: technical aspects of the LIFE project. Toxicol Pathol 35:65-74
Yim, Hyeon Woo; Slebos, Robbert J C; Randell, Scott H et al. (2007) Smoking is associated with increased telomerase activity in short-term cultures of human bronchial epithelial cells. Cancer Lett 246:24-33
Slebos, Robbert J C; Livanos, Elizabeth; Yim, Hyeon-Woo et al. (2005) Chromosomal abnormalities in bronchial epithelium from smokers, nonsmokers, and lung cancer patients. Cancer Genet Cytogenet 159:137-42
Slebos, Robbert J C; Umbach, David M; Sommer, Courtney A et al. (2004) Analytical and statistical methods to evaluate microsatellite allelic imbalance in small amounts of DNA. Lab Invest 84:649-57
Slebos, Robbert J C; Little, Ruth E; Umbach, David M et al. (2004) Mini-and microsatellite mutations in children from Chernobyl accident cleanup workers. Mutat Res 559:143-51

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