The goal of this project is to understand the three processes reponsible for DNA replication fidelity in human cells: DNA polymerase base selectivity, exonucleolytic proofreading and post-replication mismatch repair. We have determined the fidelity of DNA synthesis catalyzed by the five classes of eukaryotic DNA polymerases. The DNA polymerases have distinctly different error rates and specificities, which has implications for their roles in the various stages of DNA replication. We have also determined the fidelity of bidirectional DNA replication by the multiprotein replication apparatus in extracts of normal human cells and tumor cells. Although the overall fidelity of replication is similar on the two strands, base substitution and frameshift error rates do differ at some sites for the leading and lagging strand replication apparatus. In order to better understand the effects of known mutagens and carcinogens on the fidelity of DNA synthesis, we are performing studies of replication fidelity with DNA molecules containing DNA adducts. Emphasis is now on uniquely-placed AAF adducts, defining the probability of termination versus bypass and the extent of mutatgenic bypass. We have shown that the multiprotein replication apparatus in extracts of human HeLa cells is indeed capable of mutagenic translesion bypass of three very different types of adducts, which has implications for their possible roles in the etiology of cancer. In an attempt to understand the instabilty of microsatellite sequences in certain tumors and the instability in triplet repeat sequences in several hereditary human diseases, we have recently begun to examine the fideilty of replication of simple repetitive di- and tri-nucleotide repeat sequences. Lastly, we are examining the ability of normal and mutant human cell extracts to correct DNA substrates containing mispaired or unpaired nucleotides. These studies are important for understanding the molecular genetic basis for the initiating events in carcinogenesis and the risk posed to individuals in the population by exposure to DNA damaging agents.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065046-09
Application #
5202243
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
9
Fiscal Year
1995
Total Cost
Indirect Cost
City
State
Country
United States
Zip Code
Kunkel, Thomas A (2004) DNA replication fidelity. J Biol Chem 279:16895-8
McCulloch, Scott D; Kokoska, Robert J; Chilkova, Olga et al. (2004) Enzymatic switching for efficient and accurate translesion DNA replication. Nucleic Acids Res 32:4665-75
Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A et al. (2003) Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res 31:4541-52
Matsuda, Toshiro; Vande Berg, Brian J; Bebenek, Katarzyna et al. (2003) The base substitution fidelity of DNA polymerase beta-dependent single nucleotide base excision repair. J Biol Chem 278:25947-51
Pavlov, Youri I; Newlon, Carol S; Kunkel, Thomas A (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10:207-13
Rogozin, Igor B; Kunkel, Thomas A; Pavlov, Youri I (2002) Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence? Trends Immunol 23:12-3
Pavlov, Youri I; Rogozin, Igor B; Galkin, Alexey P et al. (2002) Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene. Proc Natl Acad Sci U S A 99:9954-9
Pavlov, Y I; Nguyen, D; Kunkel, T A (2001) Mutator effects of overproducing DNA polymerase eta (Rad30) and its catalytically inactive variant in yeast. Mutat Res 478:129-39
Pavlov, Y I; Shcherbakova, P V; Kunkel, T A (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta. Genetics 159:47-64
Jin, Y H; Obert, R; Burgers, P M et al. (2001) The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci U S A 98:5122-7

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