of Work: The long-term goal of this project is to understand DNA replication fidelity by multiprotein replication complexes. This year, progress was in three areas. We investigated the roles of mismatch repair proteins in the cisplatin and oxaliplatin resistance of human tumor cell lines by examining the correlation between defects in hMLH1, hMSH3, and hMSH6 and replicative bypass of platinum-DNA adducts. The results support the hypothesis that defects in MutS alpha function, but not MutS beta function, lead to increased replicative bypass of cisplatin adducts and therefore drug resistance. We began a search for synergistic survival and mutator effects resulting from mutations in the genes encoding replicative DNA polymerase delta and the flap endonuclease responsible for processing Okazaki fragments on the lagging strand. We also initiated studies to examine the in vivo effects of a specific amino acid substitution in yeast replicative DNA polymerases. We replaced a tryrosine hypothesized to occupy a structurally and functionally equivalent position on an alpha helix at the active site of DNA polymerases in the pol I and Pol alpha family enzymes with an alanine. Our earlier studies showed that a Tyr to Ala substitution in Klenow fragment Pol I resulted in a polymerase with reduced fidelity. We now find that a haploid yeast strain with the putative homologous pol epsilon mutation is viable. It has altered sensitivity to hydroxyurea (replication inhibitor) and methylmethane sulfonate (a DNA damaging agent), and has an elevated spontaneous mutation rate as well as increased mutagenesis induced by hydroxylaminopurine, a base analog with miscoding potential. These phenotypes are under further investigation and will be complemented by attempts to purify and characterize the mutant pol epsilon. These studies of how genomes are efficiently and correctly replicated are important for human health because spontaneous and DNA damage-induced replication errors are likely sources of mutations that may initiate human diseases. - Accessory Proteins, DNA Replication Fidelity, Deletions, Mutator, T4 DNA Polymerase

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065046-13
Application #
6290038
Study Section
Special Emphasis Panel (LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
13
Fiscal Year
1999
Total Cost
Indirect Cost
City
State
Country
United States
Zip Code
Kunkel, Thomas A (2004) DNA replication fidelity. J Biol Chem 279:16895-8
McCulloch, Scott D; Kokoska, Robert J; Chilkova, Olga et al. (2004) Enzymatic switching for efficient and accurate translesion DNA replication. Nucleic Acids Res 32:4665-75
Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A et al. (2003) Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res 31:4541-52
Matsuda, Toshiro; Vande Berg, Brian J; Bebenek, Katarzyna et al. (2003) The base substitution fidelity of DNA polymerase beta-dependent single nucleotide base excision repair. J Biol Chem 278:25947-51
Pavlov, Youri I; Newlon, Carol S; Kunkel, Thomas A (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10:207-13
Rogozin, Igor B; Kunkel, Thomas A; Pavlov, Youri I (2002) Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence? Trends Immunol 23:12-3
Pavlov, Youri I; Rogozin, Igor B; Galkin, Alexey P et al. (2002) Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene. Proc Natl Acad Sci U S A 99:9954-9
Pavlov, Y I; Nguyen, D; Kunkel, T A (2001) Mutator effects of overproducing DNA polymerase eta (Rad30) and its catalytically inactive variant in yeast. Mutat Res 478:129-39
Pavlov, Y I; Shcherbakova, P V; Kunkel, T A (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta. Genetics 159:47-64
Jin, Y H; Obert, R; Burgers, P M et al. (2001) The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci U S A 98:5122-7

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