of Work: The long-term goal of this project is to understand the fidelity of DNA synthesis by multiprotein DNA replication and repair complexes. This year, progress was made in four areas. We established the fidelity of the mitochondrial replicative DNA polymerase gamma with and without exonucleolytic proofreading and with and without the p55 processivity subunit. We obtained evidence suggesting that errors made by an active site mutant of DNA polymerase gamma contribute to a human hereditary disease, Progressive External Ophthalmoplegia. We established an in vivo system in yeast cells to determine the fidelity of DNA replication by the leading and lagging strand DNA replication machinery and used the sysyem to demonstrate that yeast origins establish a strand bias for replicational mutagenesis. We compared the error specificity of human DNA polymerase eta during copying of an immunoglobulin transgene to the base substitution specificity of somatic hypermutation. The results suggest that DNA polymerase eta contributes to the somatic hypermutagenesis required for development of a diverse population of mature high affinity antibodies in normal humans. Generally, such studies of how genomes are efficiently and correctly replicated and repaired are important for human health because spontaneous and DNA damage-induced replication errors are likely sources of mutations that may initiate human diseases, while at the same time, specialized regulated mutagenesis is required for normal development.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065046-16
Application #
6673210
Study Section
(LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
16
Fiscal Year
2002
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Kunkel, Thomas A (2004) DNA replication fidelity. J Biol Chem 279:16895-8
McCulloch, Scott D; Kokoska, Robert J; Chilkova, Olga et al. (2004) Enzymatic switching for efficient and accurate translesion DNA replication. Nucleic Acids Res 32:4665-75
Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A et al. (2003) Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res 31:4541-52
Matsuda, Toshiro; Vande Berg, Brian J; Bebenek, Katarzyna et al. (2003) The base substitution fidelity of DNA polymerase beta-dependent single nucleotide base excision repair. J Biol Chem 278:25947-51
Pavlov, Youri I; Newlon, Carol S; Kunkel, Thomas A (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10:207-13
Rogozin, Igor B; Kunkel, Thomas A; Pavlov, Youri I (2002) Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence? Trends Immunol 23:12-3
Pavlov, Youri I; Rogozin, Igor B; Galkin, Alexey P et al. (2002) Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene. Proc Natl Acad Sci U S A 99:9954-9
Pavlov, Y I; Nguyen, D; Kunkel, T A (2001) Mutator effects of overproducing DNA polymerase eta (Rad30) and its catalytically inactive variant in yeast. Mutat Res 478:129-39
Pavlov, Y I; Shcherbakova, P V; Kunkel, T A (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta. Genetics 159:47-64
Jin, Y H; Obert, R; Burgers, P M et al. (2001) The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci U S A 98:5122-7

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