In response to external and internal signals, mammalian cells elicit post-transcriptional changes in gene expression patterns that govern the global cellular response. We are keenly interested in the mechanisms that regulate the expression of proliferative, cell cycle-regulatory, and stress-response proteins. Over the past 22 years, this Project has examined numerous RBPs, noncoding (nc)RNAs, and their influence on gene expression patterns. We have paid particular attention to their impact on the stress and proliferative response of cells, two processes that are severely impaired during aging. In the past funding period, we have continued to focus on RBPs implicated in the cellular response to mitogens and stresses, but have expanded substantially into ncRNAs linear long noncoding RNAs (lnc)RNAs and circular (circRNAs) that influence these responses. Since impaired adaptation to mitogens and cell injury underlie various cancer traits (cell proliferation and survival, angiogenesis, invasion, metastasis, and evasion of immune recognition), many studies in this project use cancer cells as the model system. We have continued to investigate the influence of RBPs and ncRNAs on the homeostasis of the intestinal epithelium, cancer cells, and immune cells. During this review period, many of these studies have been carried HuR in collaboration with other groups, including those led by Drs. J.-Y. Wang (Xiao et al., Americal Journal of Physiology - Cell Physiology, 2019; Xiao et al., Gastroenterology, 2019), K. Prasanth (Sun et al., Nucleic Acids Research, 2018), and A.C. Panda (Pandey et al., Methods, 2018; Das et al., Aging News and Views, 2018; Das et al., International Journal of Medical Sciences, 2019). We also reported on noncoding RNAs influencing hepatocellular carcinoma and Kaposi sarcoma (Noh and Gorospe, Hepatology, 2018; Tsitsipatis and Gorospe, Annals of Translational Medicine, 2019). Over the past 12 months, we have also reported on ncRNAs involved in cancer, proliferation, stress-response, senescence, and other processes relevant to aging. We have continued to create tools to investigate circular RNAs and other noncoding RNAs (Panda and Gorospe, Noncoding RNA Investigation, 2018; George et al., Open Biology, 2018; Pandey et al., WIRES RNA, 2019).

Agency
National Institute of Health (NIH)
Institute
National Institute on Aging (NIA)
Type
Investigator-Initiated Intramural Research Projects (ZIA)
Project #
1ZIAAG000511-22
Application #
10004421
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
22
Fiscal Year
2019
Total Cost
Indirect Cost
Name
National Institute on Aging
Department
Type
DUNS #
City
State
Country
Zip Code
Panda, Amaresh C; Gorospe, Myriam (2018) Detection and Analysis of Circular RNAs by RT-PCR. Bio Protoc 8:
Chung, Hee Kyoung; Wang, Shelley R; Xiao, Lan et al. (2018) ?4 Coordinates Small Intestinal Epithelium Homeostasis by Regulating Stability of HuR. Mol Cell Biol 38:
Xiao, Lan; Wu, Jing; Wang, Jun-Yao et al. (2018) Long Noncoding RNA uc.173 Promotes Renewal of the Intestinal Mucosa by Inducing Degradation of MicroRNA 195. Gastroenterology 154:599-611
Noh, Ji Heon; Gorospe, Myriam (2018) AKTions by Cytoplasmic lncRNA CASC9 Promote Hepatocellular Carcinoma Survival. Hepatology 68:1675-1677
Wang, Jun-Yao; Cui, Yu-Hong; Xiao, Lan et al. (2018) Regulation of Intestinal Epithelial Barrier Function by Long Noncoding RNA uc.173 through Interaction with MicroRNA 29b. Mol Cell Biol 38:
Panda, Amaresh C; Dudekula, Dawood B; Abdelmohsen, Kotb et al. (2018) Analysis of Circular RNAs Using the Web Tool CircInteractome. Methods Mol Biol 1724:43-56
Cui, Chang-Yi; Noh, Ji Heon; Michel, Marc et al. (2018) STIM1, but not STIM2, Is the Calcium Sensor Critical for Sweat Secretion. J Invest Dermatol 138:704-707
Noh, Ji Heon; Kim, Kyoung Mi; McClusky, Waverly G et al. (2018) Cytoplasmic functions of long noncoding RNAs. Wiley Interdiscip Rev RNA 9:e1471
Basu, Sandip K; Gonit, Mesfin; Salotti, Jacqueline et al. (2018) A RAS-CaMKK?-AMPK?2 pathway promotes senescence by licensing post-translational activation of C/EBP? through a novel 3'UTR mechanism. Oncogene 37:3528-3548
Panda, Amaresh C; Martindale, Jennifer L; Gorospe, Myriam (2017) Polysome Fractionation to Analyze mRNA Distribution Profiles. Bio Protoc 7:

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