During this year we have shown the practical usefulness of selenourea, the reagent that can be soaked into the native crystals of proteins to provide the strong anomalous diffraction signal of selenium used for solving novel crystal structures of macromolecules. Selenourea was in the previous year proposed to the biocrystallographic community by us as a simple and powerful vehicle for phasing diffraction data measured at synchrotron X-ray beam lines. This reagent allowed us to solve the crystal structure of XXX, one of the enzymes from the biosynthetic pathway of the amino acid histidine in plants. Within the methodological aspects of our activities, we conducted the analysis of non-crystallographic screw axes of different types occurring in protein crystal structures stored in the Protein Data Bank (PDB). In collaboration with Dr. Wlodawer (MCL in Frederick) and other colleagues the analysis various complexes of proteins with small molecular ligands was thoroughly analyzed and validated, often correcting the original suboptimal interpretation of results available in the literature and in the PDB. The unusual crystal structures of Z-DNA were analyzed, and interpreted as highly pseudosymmetric and six-fold merohedrally twinned specimens, not observed previously for these types of crystals. Within our activity directed at solving and interpreting crystal structures of proteins having biological or medical importance, we worked on selected model plant enzymes from the biosynthetic pathways of amino acids serine and histidine as well as aliphatic polyamines, which are not synthesized in animals and therefore may be relevant for development of agents active against various pathogens, with potential application in pharmacology or agriculture. The histidine pathway in the legume plant Medicago truncatula contain seven enzymes, catalyzing several reactions (some are bifunctional). All of them are expressed and five crystal structures are solved, interpreted and recently published. The rest are crystallized and the work on them continues. Four enzymes from the serine pathway are obtained and crystallized and structures of two of them fully characterized and published. The crystal structures of several enzymes involved in biosynthesis of polyamines putrescine spermine, spermidine and thermospermine were recently solved. The interpretation of the structure of thermospermine synthetase is published and work on other aminopropyltransferases continues.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Investigator-Initiated Intramural Research Projects (ZIA)
Project #
1ZIABC010378-19
Application #
9779626
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
19
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Basic Sciences
Department
Type
DUNS #
City
State
Country
Zip Code
Ruszkowski, Milosz; Sekula, Bartosz; Ruszkowska, Agnieszka et al. (2018) Chloroplastic Serine Hydroxymethyltransferase From Medicago truncatula: A Structural Characterization. Front Plant Sci 9:584
Luo, Zhipu; Dauter, Zbigniew (2018) The crystal structure of Z-DNA with untypically coordinated Ca2+ ions. J Biol Inorg Chem 23:253-259
Wlodawer, Alexander; Dauter, Zbigniew; Porebski, Przemyslaw J et al. (2018) Detect, correct, retract: How to manage incorrect structural models. FEBS J 285:444-466
Dauter, Zbigniew; Jaskolski, Mariusz (2018) On the helical arrangements of protein molecules. Protein Sci 27:643-652
Dauter, Zbigniew; Wlodawer, Alexander (2018) Unexpected Specificity of a Trypsin-like Enzyme. Structure 26:530-531
Sekula, Bartosz; Ruszkowski, Milosz; Dauter, Zbigniew (2018) Structural Analysis of Phosphoserine Aminotransferase (Isoform 1) From Arabidopsis thaliana- the Enzyme Involved in the Phosphorylated Pathway of Serine Biosynthesis. Front Plant Sci 9:876
Sekula, Bartosz; Dauter, Zbigniew (2018) Crystal structure of thermospermine synthase from Medicago truncatula and substrate discriminatory features of plant aminopropyltransferases. Biochem J 475:787-802
Pyra, Anna; Brzozowska, Ewa; Pawlik, Krzysztof et al. (2017) Tail tubular protein A: a dual-function tail protein of Klebsiella pneumoniae bacteriophage KP32. Sci Rep 7:2223
Luo, Zhipu; Dauter, Zbigniew (2017) Embarras de richesses - It is not good to be too anomalous: Accurate structure of selenourea, a chiral crystal of planar molecules. PLoS One 12:e0171740
Dauter, Miroslawa; Dauter, Zbigniew (2017) Many Ways to Derivatize Macromolecules and Their Crystals for Phasing. Methods Mol Biol 1607:349-356

Showing the most recent 10 out of 96 publications