Work in our laboratory spanning more than two decades has demonstrated that certain drugs may be attached to well-defined carrier molecules and still retain the ability to bind to the receptor site and effect biological activity. This synthetic strategy for the attachment of drugs to carriers is termed the functionalized congener approach. The carrier molecule may be many times larger than the parent drug;indeed there is practically no maximum size limitation for a fully potent analog. Unlike the prodrug approach or the immobilization of drugs for slow release, the functionalized congener approach is designed to produce analogs for which no metabolic cleavage step is necessary for activation. Moreover, the attachment of the drug to a carrier such as a peptide may result in enhanced affinity at an extracellular receptor site and an improvement in the pharmacological profile of the parent drug through energetically favorable interaction with distal sites on a receptor. Purine derivatives containing attached chains to target distal sites of GPCRs have been developed as functionalized congeners that either activate or antagonize adenosine receptors, and a similar strategy has been used for ATP receptors. For example, the 2-position of the purine moiety has been identified for attachment of functionalized chains in ATP derivatives as P2X and P2Y receptor agonists. Reporter groups such as fluorescent dyes have been covalently attached resulting in receptor probes of relatively high affinity. The targeting of distal sites on the calcium sensing receptor has also been studied. Other means of altering pharmacokinetics of a known drug include the prodrug approach. We have prepared prodrugs of adenosine A3 agonists and antagonists, e.g. nuceloside derivatives, that are not themselves biologically active, but are able to be regenerated in biological systems. Studies of the cleavage of the blocked ligands indicates that the prodrugs are suitable as masked forms of the biologically active A3AR agonists and antagonists for future evaluation in vivo. The use of GPCR agonists for therapy has inherent limitations. The distribution of a given receptor in multiple tissues may lead to undesired side effects. Also, the desensitization of a receptor upon repeated agonist exposure may limit agonist utility. We are developing an alternate approach to achieve the beneficial effects of GPCR activation in a more spatially and temporally selective manner than the systemic administration of agonists to the native GPCR. This approach of neoceptors combines small molecule classical medicinal chemistry and gene or cell therapy. By this rational design approach, complementary structural changes are made in the receptor and ligand for selective enhancement of affinity. The spatially-selective activation of a neoceptor would be dependent on cell- or organ-target delivery of the gene. Molecular modeling, of GPCRs has been used widely to arrive at hypotheses for recognition of antagonists and agonists by ligand docking. We have are validated hypotheses for docking of ligands at purine receptors using site-directed mutagenesis. Site-directed mutagenesis and molecular modeling have been used to characterize the ligand binding sites of the P2Y1 and A3 receptors to predict which regions of a given ligand may be amenable to a chain attachment approach. With this knowledge and the ability to tailor-make new analogues of a native agonist, one may design a matched neoceptor and neoligand, i.e. the binding site of a given GPCR may be engineered to recognize synthetic agonist ligands that do not activate the native receptor. Distal sites of interaction on the engineered receptor may be targeted to allow selective enhancement of affinity in a functionalized congener. Based on predictions from molecular modeling, we have designed neoceptors for A2A and A3 adenosine receptors, in which a tailored ligand activates only engineered receptor. The success of the neoceptor strategy for the ARs validates the use of homology modeling, as well as suggests options for future therapeutics. We have explored the application of nanotechnology to the study of GPCRs. For example, dendrimers are tree-like polymers that have multiple functional sites on the periphery for attachment of ligands. We recently reported the first PAMAM dendrimer to which a GPCR ligand had been attached. This was a conjugate to which A2AAR functionalized congeners were covalently attached. The conjugate displayed potent antithrombotic activity in human platelets, while the parent dendrimer was inactive. We are using the multivalency of dendrimer conjugates to test for interactaction with dimeric and higher order multimeric GPCR assemblies. Recently we reported the first dendrimer-boound ligands for the P2Y receptor family. UDP-glucuronic acid served as a functionalized congener that could be covalently tethered from a dendrimer carrier with the retention or enhancement of potency at the P2Y14 receptor. We have also coupled A3 adenosine receptor agonists and P2Y14 receptor agonists to the same dendrimeric carrier, with the retention of high potency at both receptors. It is becoming apparent that the receptors have higher degrees of organization, i.e. they form functionally complex aggegrates, and there is a need for pharmacological tools that address this multiplicity. Striking differences have been noted between the monomeric ligands and the multivalent dendrimer conjugates - either in the potency or selectivity of the ligand or in the kinetics of the biological effect. We recently showed that a dendrimeric adenosine derivative was highly protective to cardiac cells in culture that were exposed to oxidative stress. The dendrimer was considerably more potent in protection than the corresponding nucleoside monomer. The protection was dependent on the expression of the A3 receptor in the cells. An A3 receptor-selective dendrimer (agonist) was shown to potently protect murine hearts against ischemic damage in an isolated heart model. We have shown that a modified version of an antiasthamtic drug, theophylline, that might also have neuroprotective or anticancer properties, can be coupled to PAMAM dendrimeric polymers to form a multivalent display. These conjugates, which are highly potent as antagonists of adenosine receptors without cleavage of the drug, were synthesized using click chemistry, and the substitution was varied systematically to demonstrate cooperativity of binding that could indicate bridging multiple receptors. This study of antagonist conjugation is an example of how to generally improve the effectiveness or selectivity of a wide variety of small molecules that act at GPCRs.

Project Start
Project End
Budget Start
Budget End
Support Year
28
Fiscal Year
2011
Total Cost
$289,087
Indirect Cost
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Duroux, Romain; Ciancetta, Antonella; Mannes, Philip et al. (2017) Bitopic fluorescent antagonists of the A2A adenosine receptor based on pyrazolo[4,3-e][1,2,4]triazolo[1,5-c]pyrimidin-5-amine functionalized congeners. Medchemcomm 8:1659-1667
Lloyd, John R; Jayasekara, P Suresh; Jacobson, Kenneth A (2016) Characterization of Polyamidoamino (PAMAM) Dendrimers Using In-Line Reversed Phase LC Electrospray Ionization Mass Spectrometry. Anal Methods 8:263-269
Ciruela, Francisco; Fernández-Dueñas, Víctor; Jacobson, Kenneth A (2015) Lighting up G protein-coupled purinergic receptors with engineered fluorescent ligands. Neuropharmacology 98:58-67
Kirk, Kenneth L; Jacobson, Kenneth A (2014) History of Chemistry in the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK). Bull Hist Chem 39:150-165
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Ciruela, Francisco; Jacobson, Kenneth A; Fernández-Dueñas, Víctor (2014) Portraying G protein-coupled receptors with fluorescent ligands. ACS Chem Biol 9:1918-28
Jayasekara, P Suresh; Barrett, Matthew O; Ball, Christopher B et al. (2014) 4-Alkyloxyimino derivatives of uridine-5'-triphosphate: distal modification of potent agonists as a strategy for molecular probes of P2Y2, P2Y4, and P2Y6 receptors. J Med Chem 57:3874-83
Dix, Andrew V; Moss, Steven M; Phan, Khai et al. (2014) Programmable nanoscaffolds that control ligand display to a G-protein-coupled receptor in membranes to allow dissection of multivalent effects. J Am Chem Soc 136:12296-303
Paoletta, Silvia; Tosh, Dilip K; Salvemini, Daniela et al. (2014) Structural probing of off-target G protein-coupled receptor activities within a series of adenosine/adenine congeners. PLoS One 9:e97858
Kozma, Eszter; Jayasekara, P Suresh; Squarcialupi, Lucia et al. (2013) Fluorescent ligands for adenosine receptors. Bioorg Med Chem Lett 23:26-36

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