The overall goal of this work is to develop anatomical, functional, and molecular magnetic resonance imaging (MRI) techniques that allow non-invasive assessment of brain function and apply these tools to study plasticity and learning in the rodent brain. MRI techniques are having a broad impact on understanding brain. Anatomical based MRI has been very useful for separating gray and white matter and detecting numerous brain disorders. Functional MRI techniques enable detection of regions of the brain that are active during a task. Molecular MRI is an emerging area, whose major goal is to image a large variety of processes in tissues. The goal of this project is to translate MRI developments in all these areas to study system level changes that occur in the rodent brain during plasticity and learning.
Aim 1 : Over the past few years, we have completed studies in the rodent brain that acquired very high temporal and spatial resolution functional MRI (fMRI) to monitor changes in hemodynamics as a surrogate marker of electrical activity during forepaw stimulation. Work over the past year has focused on obtaining very high spatial and temporal resolution fMRI images to determine if the onset of fMRI signal corresponds to the input layer for neural signaling. A one dimensional imaging technique enables us to achieve 50 micron through cortex resolution and 50 msec temporal resolution. In somatosensory cortex, fMRI signal start in layer 4 at about 600-800 msec consistent with our previous work. In a model where neural input into somatosensory cortex switches to beginning in layer 2/3 and or layer 5 the fMRI onset also switches to layer 2/3. This exciting preliminary work is consistent with the hypothesis that the onset of fMRI enables extracting information about the onset of neural activity in a brain region. In the coming year we will test this idea in other brain regions such as motor cortex as well as translate the imaging strategy to the human brain to look at onset dynamics at high spatial temporal resolution in the human brain.
Aim 2 : Over the past several years we have demonstrated that manganese chloride enables MRI contrast that defines neural architecture, can monitor activity, and can be used to trace neural connections. Over the last couple of years we have completed the assignment of cortical layers detected using manganese enhanced MRI by comparison to histology and have demonstrated that functional anatomy of several cortical regions of the rodent brain can be defined in individual animals. In particular, clear cytoarchitectural boundaries can be detected between numerous brain areas enabling, for the first time, cytoarchitectural changes to be followed in individual brains over time. In addition, we have completed studies that trace the laminar inputs of the olfactory pathway from the olfactory bulb to rodent frontal cortex. We have used this laminar specific tracing to determine whether manganese enhanced MRI can detect changes due to learning. In a simple fear conditioning experiment (odor with foot shock)a small increase in manganese influx from olfactory cortex to orbital frontal cortex was the only significant change detected. Analysing this change at higher spatial resolution indicated that tracing of manganese was increased by 50% into layer 1 of orbital frontal cortex. This predicts a strengthening of this synapse. In the coming year we will use this information to guide further study of synaptic strength changes during fear conditioning under Aim 4.
Aim 3 : Over the past few years we established a rodent model that uses peripheral denervation to study brain platicity in response to the injury. Over the past couple of years we have showed that denervation of the infraorbital nerve leads to large increases in barrel cortex responses along the spared whisker pathway as well as large ipslateral cortical activity consistent with our previouus work in the forepaw and hindpaw. fMRI and manganese enhanced MRI predicted a strengthening of thalamo-cortical input along the spared pathway which was verified in slice electrophysiology studies in collaboration with John Isaac's laboratory. Prior to this it was widely beleived that the thalamo-cortical input was not capable of strengthening after the critical period. Over the next year we will work out the mechanisms for this synaptic strenghening. Over the past year we have also focused on understanding the role of the ipsilateral activation taht depends on neural signalling from the spared cortex to the ipsilateral cortex via the corpus callosum. The goal is to determine the significance of this long distance cortical plasticity as well as determine using MRI where the synaptic changes occur underlying this change in activity. In a series of studies we have shown that this ipsilateral activation helps to protect cortical territory from take over by adjacent cortical representations. Thus, the hypothesis that we will continue to test is that when one side of a body part is denervated, the spared side occupies the injuried side cortex via a corpus collasoal pathway.
Aim 4 : We have begun to explore the use of advanced MRI tools for studying simple learning paradigms in the rodent. In order to accomplish this we have been developing techniques that will enable routine fMRI in awake rodents. While fMRI is widely performed in humans and awake primates there have only been a few scattered studies on awake rodents. Training regimens and techniques to hold the head have been developed over the past two years. Interestingly, we have large differences in brain fMRI activation due to somatosensory stimulation or visual stimulation in the awake animal vs anesthetized animal that are stimulation dependent. Somatosensory stimulation gives a strong fMRI response in anesthetized but not awake rodents and visual stimulation give a strong response in awake but not anesthetized animals. Over the next year we will verify this result with electrophysiology. This is important to lay the ground work for the best types of stimuli that give good fMRI responses in the awake rodent to better design behavioral pardigms that are consistent with fMRI.

Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
Zip Code
Gu, Xiaochun; Chen, Wei; You, Jiang et al. (2018) Long-term optical imaging of neurovascular coupling in mouse cortex using GCaMP6f and intrinsic hemodynamic signals. Neuroimage 165:251-264
Gu, Xiaochun; Chen, Wei; Volkow, Nora D et al. (2018) Synchronized Astrocytic Ca2+ Responses in Neurovascular Coupling during Somatosensory Stimulation and for the Resting State. Cell Rep 23:3878-3890
Daoust, A; Dodd, S; Nair, G et al. (2017) Transverse relaxation of cerebrospinal fluid depends on glucose concentration. Magn Reson Imaging 44:72-81
Chung, Seungsoo; Jeong, Ji-Hyun; Ko, Sukjin et al. (2017) Peripheral Sensory Deprivation Restores Critical-Period-like Plasticity to Adult Somatosensory Thalamocortical Inputs. Cell Rep 19:2707-2717
Atanasijevic, Tatjana; Bouraoud, Nadia; McGavern, Dorian B et al. (2017) Transcranial manganese delivery for neuronal tract tracing using MEMRI. Neuroimage 156:146-154
Yu, Xin; He, Yi; Wang, Maosen et al. (2016) Sensory and optogenetically driven single-vessel fMRI. Nat Methods 13:337-40
Chittiboina, Prashant; Talagala, S Lalith; Merkle, Hellmut et al. (2016) Endosphenoidal coil for intraoperative magnetic resonance imaging of the pituitary gland during transsphenoidal surgery. J Neurosurg 125:1451-1459
Saar, Galit; Cheng, Ning; Belluscio, Leonardo et al. (2015) Laminar specific detection of APP induced neurodegeneration and recovery using MEMRI in an olfactory based Alzheimer's disease mouse model. Neuroimage 118:183-92
Du, Congwu; Volkow, Nora D; Koretsky, Alan P et al. (2014) Low-frequency calcium oscillations accompany deoxyhemoglobin oscillations in rat somatosensory cortex. Proc Natl Acad Sci U S A 111:E4677-86
Roth, Theodore L; Nayak, Debasis; Atanasijevic, Tatjana et al. (2014) Transcranial amelioration of inflammation and cell death after brain injury. Nature 505:223-8

Showing the most recent 10 out of 43 publications