The proposed research aims to develop a chemically-based system for inducing the intracellular association of target proteins in specific cells by using nontoxic, cell permeable, synthetic ligands. Organic compounds will be chemically synthesized that induce either the heterodimerization or homodimerization of intracellular proteins involved in signal transduction, transcription, protein degradation, and programmed cell death. Experiments are planned to optimize specificity and potency of the organic compounds by synthesizing sterically demanding substituents on the dimerizing ligands and introducing compensating mutations on the dimerization domains. The cell permeable synthetic reagents will be used to: (l) activate an artificial signaling pathway coupled to an inducible gene or antisense gene, (2) activate direct transcription of a target gene, (3) induce the ubiquitin-dependent intracellular proteolysis of a target protein, (4) induce the membrane translocation of raf, a component of the mitogenic signaling pathway, and (5) induce the apoptotic death of target brain cells and thereby determine their role in brain development and function. Regulated protein dimerization with cell permeable, synthetic ligands will provide a new level of control of many fundamental processes in experimental biology. Orally active dimerizers may also function as universal drugs when used to turn on or off the synthesis of therapeutic proteins (e.g., insulin for diabetes, erythropoietin for anemia, bone morphogenetic factors for osteoporis) or therapeutic nucleic acids (e.g., antisense agents or ribozymes) in gene therapy patients.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
1R01GM052067-01
Application #
2190949
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Project Start
1994-12-01
Project End
1998-11-30
Budget Start
1994-12-01
Budget End
1995-11-30
Support Year
1
Fiscal Year
1995
Total Cost
Indirect Cost
Name
Harvard University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
071723621
City
Cambridge
State
MA
Country
United States
Zip Code
02138
Micalizio, Glenn C; Schreiber, Stuart L (2002) A boronic ester annulation strategy for diversity-oriented organic synthesis. Angew Chem Int Ed Engl 41:152-4
Nghiem, Paul; Park, Peter K; Kim Ys, Yong-son et al. (2002) ATR is not required for p53 activation but synergizes with p53 in the replication checkpoint. J Biol Chem 277:4428-34
Clemons, Paul A; Gladstone, Brian G; Seth, Abhinav et al. (2002) Synthesis of calcineurin-resistant derivatives of FK506 and selection of compensatory receptors. Chem Biol 9:49-61
Tallarico, J A; Depew, K M; Pelish, H E et al. (2001) An alkylsilyl-tethered, high-capacity solid support amenable to diversity-oriented synthesis for one-bead, one-stock solution chemical genetics. J Comb Chem 3:312-8
Blackwell, H E; Clemons, P A; Schreiber, S L (2001) Exploiting site-site interactions on solid support to generate dimeric molecules. Org Lett 3:1185-8
Blackwell, H E; Perez, L; Stavenger, R A et al. (2001) A one-bead, one-stock solution approach to chemical genetics: part 1. Chem Biol 8:1167-82
Clemons, P A; Koehler, A N; Wagner, B K et al. (2001) A one-bead, one-stock solution approach to chemical genetics: part 2. Chem Biol 8:1183-95
Nghiem, P; Park, P K; Kim , Y et al. (2001) ATR inhibition selectively sensitizes G1 checkpoint-deficient cells to lethal premature chromatin condensation. Proc Natl Acad Sci U S A 98:9092-7
Hardwick, J S; Kuruvilla, F G; Tong, J K et al. (1999) Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. Proc Natl Acad Sci U S A 96:14866-70
Clemons, P A (1999) Design and discovery of protein dimerizers. Curr Opin Chem Biol 3:112-5

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