This is an application to investigate the origin of """"""""endogenous"""""""" DNA adducts (i.e., those not derived directly from exogenous chemicals). The hypothesis to be tested is that electrophilic products of deoxyribose oxidation in DNA can react with bases to form adducts. This hypothesis is based on the applicant's observation that a product of 4'-oxidation of deoxyribose reacts with DNA to form a mutagenic guanine adduct previously thought to be derived from malondialdehyde, a product of lipid peroxidation. This proposed project will systematically explore the chemistry of DNA base adduction by several electrophilic deoxyribose oxidation products. Studies in aim 1 will examine base propenals as a source of the pyrimidopurinone of guanine, M1G. M1G adducts will be measured in DNA exposed in vitro toDNA-directed oxidant antibiotics or to peroxynitrite and iron- or copper-hydrogen peroxide mixtures. In other studies, the relative roles of lipid peroxidation aldehyde products and base propenals will be compared in oxidations with yeast, bacteria and mammalian cells. Studies in aim 2 will examine the role of phosphoglycoaldehyde residues in the formation of etheno adducts of adenine, guanine and cytidine in DNA. As in aim 1, both in vitro studies with DNA and studies with cell model systems will be used to compare phosphoglycoaldehyde and lipid peroxidation-derived aldehydes as sources of etheno adducts. Studies in aim 3 will examine products of base modification by 1,4-dioxo-2-butene and formyl phosphate from 5'-H abstraction-initiated deoxyribose oxidation in DNA. The focus of aim 4 is the biosynthesis of [U-13C]- and [U-14C]-deoxyribose-containing DNA for studies of the deoxyribose origin of adducts.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM059790-03
Application #
6520071
Study Section
Special Emphasis Panel (ZRG1-SSS-N (04))
Program Officer
Wolfe, Paul B
Project Start
2000-05-01
Project End
2003-04-30
Budget Start
2002-05-01
Budget End
2003-04-30
Support Year
3
Fiscal Year
2002
Total Cost
$244,615
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Engineering (All Types)
Type
Schools of Engineering
DUNS #
City
Cambridge
State
MA
Country
United States
Zip Code
02139
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Jiang, Tao; Zhou, Xinfeng; Taghizadeh, Koli et al. (2007) N-formylation of lysine in histone proteins as a secondary modification arising from oxidative DNA damage. Proc Natl Acad Sci U S A 104:60-5
Pang, Bo; Zhou, Xinfeng; Yu, Hongbin et al. (2007) Lipid peroxidation dominates the chemistry of DNA adduct formation in a mouse model of inflammation. Carcinogenesis 28:1807-13
Chen, Bingzi; Vu, Choua C; Byrns, Michael C et al. (2006) Formation of 1,4-dioxo-2-butene-derived adducts of 2'-deoxyadenosine and 2'-deoxycytidine in oxidized DNA. Chem Res Toxicol 19:982-5
Zhou, Xinfeng; Liberman, Rosa G; Skipper, Paul L et al. (2005) Quantification of DNA strand breaks and abasic sites by oxime derivatization and accelerator mass spectrometry: application to gamma-radiation and peroxynitrite. Anal Biochem 343:84-92
Collins, Christiane; Zhou, Xinfeng; Wang, Rong et al. (2005) Differential oxidation of deoxyribose in DNA by gamma and alpha-particle radiation. Radiat Res 163:654-62
Zhou, Xinfeng; Taghizadeh, Koli; Dedon, Peter C (2005) Chemical and biological evidence for base propenals as the major source of the endogenous M1dG adduct in cellular DNA. J Biol Chem 280:25377-82
Bohnert, Tonika; Gingipalli, Lakshmaiah; Dedon, Peter C (2004) Reaction of 2'-deoxyribonucleosides with cis- and trans-1,4-dioxo-2-butene. Biochem Biophys Res Commun 323:838-44
Collins, Christiane; Awada, Mohamad M; Zhou, Xinfeng et al. (2003) Analysis of 3'-phosphoglycolaldehyde residues in oxidized DNA by gas chromatography/negative chemical ionization/mass spectrometry. Chem Res Toxicol 16:1560-6
Plastaras, John P; Dedon, Peter C; Marnett, Lawrence J (2002) Effects of DNA structure on oxopropenylation by the endogenous mutagens malondialdehyde and base propenal. Biochemistry 41:5033-42

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