The primary goal of the Epi4K Center Without Walls is to increase understanding of the genetic basis of human epilepsy in order to improve the well-being of patients and family members living with these disorders. This improvement will come in the form of better diagnostics, treatments and cures. To accomplish this goal, Epi4K aims to analyze the genomes of a large number of well-phenotyped epilepsy patients and families collected by investigators from several major research groups. The specific goals of this core (3 of 7 - Sequencing, Biostatistics, and Bioinformatics Core) are to 1) sequence and annotate 4,000 genomes, 2) develop computational procedures for calling CNVs in whole exome data, 3) identify and prioritize variants of interest for all three projects, 4) conduct follow up genotypin analyses in a cohort of additional cases and controls, and 5) quickly and efficiently share data among the Epi4K consortium.

Public Health Relevance

Epilepsy is one of the most common human neurological disorders, affecting 3% of the population. Although it is clear that there is a strong genetic component for epilepsy, there are still only a few genes known. The Epi4K project will identify new genes and genetic pathways in epilepsy and will directly benefit individuals with epilepsy and their families through improved diagnostic, prognostic and recurrence risk information.

Agency
National Institute of Health (NIH)
Institute
National Institute of Neurological Disorders and Stroke (NINDS)
Type
Research Project--Cooperative Agreements (U01)
Project #
3U01NS077303-04S1
Application #
8920192
Study Section
Special Emphasis Panel (ZNS1-SRB-B (29))
Program Officer
Stewart, Randall R
Project Start
2011-09-30
Project End
2016-07-31
Budget Start
2014-08-01
Budget End
2015-07-31
Support Year
4
Fiscal Year
2014
Total Cost
$157,166
Indirect Cost
$57,166
Name
Duke University
Department
Genetics
Type
Schools of Medicine
DUNS #
044387793
City
Durham
State
NC
Country
United States
Zip Code
27705
Raghavan, Neha S; Brickman, Adam M; Andrews, Howard et al. (2018) Whole-exome sequencing in 20,197 persons for rare variants in Alzheimer's disease. Ann Clin Transl Neurol 5:832-842
Assoum, Mirna; Lines, Matthew A; Elpeleg, Orly et al. (2018) Further delineation of the clinical spectrum of de novo TRIM8 truncating mutations. Am J Med Genet A 176:2470-2478
Shaw, Kelly A; Cutler, David J; Okou, David et al. (2018) Genetic variants and pathways implicated in a pediatric inflammatory bowel disease cohort. Genes Immun :
Winawer, Melodie R; Griffin, Nicole G; Samanamud, Jorge et al. (2018) Somatic SLC35A2 variants in the brain are associated with intractable neocortical epilepsy. Ann Neurol 83:1133-1146
Ottman, Ruth; Freyer, Catharine; Mefford, Heather C et al. (2018) Return of individual results in epilepsy genomic research: A view from the field. Epilepsia 59:1635-1642
Heinzen, Erin L; O'Neill, Adam C; Zhu, Xiaolin et al. (2018) De novo and inherited private variants in MAP1B in periventricular nodular heterotopia. PLoS Genet 14:e1007281
Epilepsy Genetics Initiative (2018) De novo variants in the alternative exon 5 of SCN8A cause epileptic encephalopathy. Genet Med 20:275-281
von Spiczak, Sarah; Helbig, Katherine L; Shinde, Deepali N et al. (2017) DNM1 encephalopathy: A new disease of vesicle fission. Neurology 89:385-394
Mori, Mari; Haskell, Gloria; Kazi, Zoheb et al. (2017) Sensitivity of whole exome sequencing in detecting infantile- and late-onset Pompe disease. Mol Genet Metab 122:189-197
Epi4K Consortium (2017) Phenotypic analysis of 303 multiplex families with common epilepsies. Brain 140:2144-2156

Showing the most recent 10 out of 38 publications